RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 CORO1BQ9BR76 489 aa12.46□□□□□ -0.41
CUX1-207ENST00000465461 IMPG2Q9BZV3 1241 aa12.46□□□□□ -0.41
CUX1-207ENST00000465461 DNAJC25Q9H1X3 360 aa12.46□□□□□ -0.41
CUX1-207ENST00000465461 WDR6Q9NNW5 1121 aaKnown RBP12.46□□□□□ -0.41
CUX1-207ENST00000465461 CDH9Q9ULB4 789 aa12.46□□□□□ -0.41
CUX1-207ENST00000465461 PCDHB5Q9Y5E4 795 aa12.46□□□□□ -0.41
CUX1-207ENST00000465461 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.46□□□□□ -0.41
CUX1-207ENST00000465461 CLUHO75153 1309 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 LOC730098B7Z3J9 87 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 CLDN5O00501 218 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 N4BP1O75113 896 aaKnown RBP12.45□□□□□ -0.42
CUX1-207ENST00000465461 XYLBO75191 536 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 PAPLNO95428 1278 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 RHOP08100 348 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 GJA1P17302 382 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 PTPN1P18031 435 aaKnown RBP12.45□□□□□ -0.42
CUX1-207ENST00000465461 ATF6P18850 670 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 PCSK1P29120 753 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 HOXA9P31269 272 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 MARSP56192 900 aaKnown RBP12.45□□□□□ -0.42
CUX1-207ENST00000465461 TYRO3Q06418 890 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 STX1AQ16623 288 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 DDR2Q16832 855 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 SLC5A9Q2M3M2 681 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 ZNF394Q53GI3 561 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 POTEHQ6S545 545 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 ACOT1Q86TX2 421 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 SPATA2LQ8IUW3 424 aaPredicted RBP12.45□□□□□ -0.42
CUX1-207ENST00000465461 GJD3Q8N144 294 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 SPATA18Q8TC71 538 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 FAM200AQ8TCP9 573 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 ING5Q8WYH8 240 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 TCEAL4Q96EI5 215 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 PCED1BQ96HM7 432 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 NECTIN4Q96NY8 510 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 TWNKQ96RR1 684 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 MYADMQ96S97 322 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 BCO2Q9BYV7 579 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 NIF3L1Q9GZT8 377 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 ANO10Q9NW15 660 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 COQ4Q9Y3A0 265 aa12.45□□□□□ -0.42
CUX1-207ENST00000465461 NOTCH4Q99466 2003 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 SYCE3A1L190 88 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 C19orf67A6NJJ6 358 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 AFPP02771 609 aaKnown RBP12.44□□□□□ -0.42
CUX1-207ENST00000465461 MYL4P12829 197 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 P4HA1P13674 534 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 PTPN2P17706 415 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 BDNFP23560 247 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 FSHRP23945 695 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 GBP2P32456 591 aaPredicted RBP12.44□□□□□ -0.42
CUX1-207ENST00000465461 CCR2P41597 374 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 MTIF2P46199 727 aaKnown RBP12.44□□□□□ -0.42
CUX1-207ENST00000465461 ALDH1A3P47895 512 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 APBA1Q02410 837 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 MTMR3Q13615 1198 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 KLHL40Q2TBA0 621 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 PABPC1LQ4VXU2 614 aaKnown RBP12.44□□□□□ -0.42
CUX1-207ENST00000465461 WDR44Q5JSH3 913 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 SCN4BQ8IWT1 228 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 C12orf29Q8N999 325 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 CCDC150Q8NCX0 1101 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 LMO3Q8TAP4 145 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 SPPL2BQ8TCT7 592 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 WHAMMQ8TF30 809 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 KAT5Q92993 513 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 ZNF512Q96ME7 567 aaPredicted RBP12.44□□□□□ -0.42
CUX1-207ENST00000465461 CRACR2AQ9BSW2 395 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 B3GNT5Q9BYG0 378 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 THAP9Q9H5L6 903 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 ZNF334Q9HCZ1 680 aaPredicted RBP12.44□□□□□ -0.42
CUX1-207ENST00000465461 MAGEC2Q9UBF1 373 aaPredicted RBP12.44□□□□□ -0.42
CUX1-207ENST00000465461 PRKAG3Q9UGI9 489 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 MAFFQ9ULX9 164 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 NFE2L3Q9Y4A8 694 aa12.44□□□□□ -0.42
CUX1-207ENST00000465461 DENND4AQ7Z401 1863 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 KCNJ18B7U540 433 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 DLL1O00548 723 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 FAM163BP0C2L3 166 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 CCDC130P13994 396 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 TUFMP49411 452 aaKnown RBP12.43□□□□□ -0.42
CUX1-207ENST00000465461 CACNA2D1P54289 1103 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 EPHB3P54753 998 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 KCNJ12Q14500 433 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 NFE2Q16621 373 aaPredicted RBP12.43□□□□□ -0.42
CUX1-207ENST00000465461 ANO6Q4KMQ2 910 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 CYP26C1Q6V0L0 522 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 RRAGAQ7L523 313 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 DNAJB7Q7Z6W7 309 aaPredicted RBP12.43□□□□□ -0.42
CUX1-207ENST00000465461 ARHGEF19Q8IW93 802 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 ELMOD1Q8N336 334 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 B3GALNT2Q8NCR0 500 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 EHBP1Q8NDI1 1231 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 MYCBPAPQ8TBZ2 947 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 ENOX1Q8TC92 643 aaKnown RBP12.43□□□□□ -0.42
CUX1-207ENST00000465461 C2orf15Q8WU43 125 aaKnown RBP12.43□□□□□ -0.42
CUX1-207ENST00000465461 ZNF518BQ9C0D4 1074 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 ELOVL4Q9GZR5 314 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 FAM49BQ9NUQ9 324 aa12.43□□□□□ -0.42
CUX1-207ENST00000465461 FANCLQ9NW38 375 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms