RNA–Protein interactions for RNA: ENST00000459727.5

HDAC3-202, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-202ENST00000459727 ASNSD1Q9NWL6 643 aa9.31□□□□□ -0.92
HDAC3-202ENST00000459727 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.31□□□□□ -0.92
HDAC3-202ENST00000459727 TNFSF13BQ9Y275 285 aa9.31□□□□□ -0.92
HDAC3-202ENST00000459727 R3HDM2Q9Y2K5 976 aaKnown RBP9.31□□□□□ -0.92
HDAC3-202ENST00000459727 CSADQ9Y600 493 aa9.31□□□□□ -0.92
HDAC3-202ENST00000459727 USH1CQ9Y6N9 552 aa9.31□□□□□ -0.92
HDAC3-202ENST00000459727 CLUHO75153 1309 aa9.31□□□□□ -0.92
HDAC3-202ENST00000459727 ZNF541Q9H0D2 1346 aa9.31□□□□□ -0.92
HDAC3-202ENST00000459727 PCNTO95613 3336 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 COL1A2P08123 1366 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 APOC4-APOC2K7ER74 178 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 SGK1O00141 431 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 IRF6O14896 467 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 FAM189A1O60320 539 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 WFS1O76024 890 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 APOC2P02655 101 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 GSTA2P09210 222 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 SETSIPP0DME0 302 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 MCF2P10911 925 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 KRT15P19012 456 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 GJC1P36383 396 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 VPS41P49754 854 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 YARSP54577 528 aaKnown RBP9.3□□□□□ -0.92
HDAC3-202ENST00000459727 MYL6P60660 151 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 IRX3P78415 501 aaPredicted RBP9.3□□□□□ -0.92
HDAC3-202ENST00000459727 TFAMQ00059 246 aaKnown RBP9.3□□□□□ -0.92
HDAC3-202ENST00000459727 PLCB3Q01970 1234 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 LAMTOR4Q0VGL1 99 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 BNIP1Q12981 228 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 TMED2Q15363 201 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 TRIP13Q15645 432 aaPredicted RBP9.3□□□□□ -0.92
HDAC3-202ENST00000459727 PDK4Q16654 411 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 CCDC142Q17RM4 750 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 TMEM132AQ24JP5 1023 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 EFHC2Q5JST6 749 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 ATF7IP2Q5U623 682 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 LMBRD2Q68DH5 695 aaPredicted RBP9.3□□□□□ -0.92
HDAC3-202ENST00000459727 CYP4F22Q6NT55 531 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 MFSD7Q6UXD7 560 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 SAMD7Q7Z3H4 446 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 CPNE8Q86YQ8 564 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 IFNLR1Q8IU57 520 aaPredicted RBP9.3□□□□□ -0.92
HDAC3-202ENST00000459727 MAP7D3Q8IWC1 876 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 PDIK1LQ8N165 341 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.3□□□□□ -0.92
HDAC3-202ENST00000459727 UHMK1Q8TAS1 419 aaKnown RBP9.3□□□□□ -0.92
HDAC3-202ENST00000459727 PRPF31Q8WWY3 499 aaKnown RBP9.3□□□□□ -0.92
HDAC3-202ENST00000459727 MAML1Q92585 1016 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 ZKSCAN4Q969J2 545 aaPredicted RBP9.3□□□□□ -0.92
HDAC3-202ENST00000459727 HAUS1Q96CS2 278 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 PITPNM3Q9BZ71 974 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 SPATC1LQ9H0A9 340 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 TRABDQ9H4I3 376 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 VPS37BQ9H9H4 285 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 PRDM16Q9HAZ2 1276 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 FGFR1OP2Q9NVK5 253 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 DNPEPQ9ULA0 475 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 GJA3Q9Y6H8 435 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 IVNS1ABPQ9Y6Y0 642 aa9.3□□□□□ -0.92
HDAC3-202ENST00000459727 IQANK1A0A1B0GTG1 560 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 E7ESA3 106 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 CXCL11O14625 94 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 ERBB2P04626 1255 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 TROVE2P10155 538 aaKnown RBP eCLIP9.29□□□□□ -0.92
HDAC3-202ENST00000459727 VDRP11473 427 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 HARSP12081 509 aaKnown RBP9.29□□□□□ -0.92
HDAC3-202ENST00000459727 ALADP13716 330 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 NQO1P15559 274 aaKnown RBP9.29□□□□□ -0.92
HDAC3-202ENST00000459727 PECAM1P16284 738 aaPredicted RBP9.29□□□□□ -0.92
HDAC3-202ENST00000459727 BRD2P25440 801 aaKnown RBP9.29□□□□□ -0.92
HDAC3-202ENST00000459727 NF2P35240 595 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 ASPAP45381 313 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 GABRB2P47870 512 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 PSMC1P62191 440 aaKnown RBP9.29□□□□□ -0.92
HDAC3-202ENST00000459727 ELF3P78545 371 aaPredicted RBP9.29□□□□□ -0.92
HDAC3-202ENST00000459727 ATP11AP98196 1134 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 SP2Q02086 613 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 MYO1EQ12965 1108 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 DGKZQ13574 1117 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 CCDC38Q502W7 563 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 ZNF484Q5JVG2 852 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 CELF3Q5SZQ8 465 aaKnown RBP9.29□□□□□ -0.92
HDAC3-202ENST00000459727 WLSQ5T9L3 541 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 LGSNQ5TDP6 509 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 KAZNQ674X7 775 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 TRIM42Q8IWZ5 723 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 AGGF1Q8N302 714 aaeCLIP9.29□□□□□ -0.92
HDAC3-202ENST00000459727 RNF149Q8NC42 400 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 GIMAP7Q8NHV1 300 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 MGARPQ8TDB4 240 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 LRRC8CQ8TDW0 803 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 PYROXD1Q8WU10 500 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 PRCCQ92733 491 aaPredicted RBP9.29□□□□□ -0.92
HDAC3-202ENST00000459727 USP6NLQ92738 828 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 INPP5DQ92835 1189 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 KLHL29Q96CT2 875 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 ZBTB45Q96K62 511 aaPredicted RBP9.29□□□□□ -0.92
HDAC3-202ENST00000459727 TBCBQ99426 244 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 PCYT2Q99447 389 aa9.29□□□□□ -0.92
HDAC3-202ENST00000459727 HERPUD2Q9BSE4 406 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms