RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 EDARQ9UNE0 448 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 GPR34Q9UPC5 381 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 MAPRE3Q9UPY8 281 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 TMED5Q9Y3A6 229 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 EMC9Q9Y3B6 208 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 A0A0G2JPF8 293 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 RRN3P2A6NIE6 340 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 HNRNPCL3B7ZW38 293 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 PI4K2BG5E9Z4 385 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 EYA2O00167 538 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 FRS3O43559 492 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 BRINP1O60477 761 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 TSPAN3O60637 253 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 SERPINC1P01008 464 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 HNRNPCL4P0DMR1 293 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 ZKSCAN1P17029 563 aaPredicted RBP5.84□□□□□ -1.47
VPS41-209ENST00000457055 ATP5F1P24539 256 aaPredicted RBP5.84□□□□□ -1.47
VPS41-209ENST00000457055 RPL13P26373 211 aaKnown RBP5.84□□□□□ -1.47
VPS41-209ENST00000457055 PRKAR1BP31321 381 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 ARPC4P59998 168 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 KLHL30Q0D2K2 578 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 CDC16Q13042 620 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 GPS2Q13227 327 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 LAMB3Q13751 1172 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 DDR2Q16832 855 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 KRBOX4Q5JUW0 171 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 GPR139Q6DWJ6 353 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 ATF7IPQ6VMQ6 1270 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 LEKR1Q6ZMV7 388 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 FAM47EQ6ZV65 393 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 CENPQQ7L2Z9 268 aaPredicted RBP5.84□□□□□ -1.47
VPS41-209ENST00000457055 COLGALT2Q8IYK4 626 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 CBARPQ8N350 705 aaPredicted RBP5.84□□□□□ -1.47
VPS41-209ENST00000457055 BVESQ8NE79 360 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 ANKRD20A12PQ8NF67 263 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 CTCFLQ8NI51 663 aaPredicted RBP5.84□□□□□ -1.47
VPS41-209ENST00000457055 DNAAF4Q8WXU2 420 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 ANKRD7Q92527 254 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 SHC3Q92529 594 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 GIMAP5Q96F15 307 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 CDCA5Q96FF9 252 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 THOC1Q96FV9 657 aaKnown RBP5.84□□□□□ -1.47
VPS41-209ENST00000457055 VPS39Q96JC1 886 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 C16orf45Q96MC5 204 aaPredicted RBP5.84□□□□□ -1.47
VPS41-209ENST00000457055 RBM15Q96T37 977 aaKnown RBP eCLIP5.84□□□□□ -1.47
VPS41-209ENST00000457055 SYT3Q9BQG1 590 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 DDX18Q9NVP1 670 aaKnown RBP5.84□□□□□ -1.47
VPS41-209ENST00000457055 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.84□□□□□ -1.47
VPS41-209ENST00000457055 DACT1Q9NYF0 836 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 WDR37Q9Y2I8 494 aa5.84□□□□□ -1.47
VPS41-209ENST00000457055 GSG1L2A8MUP6 293 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 NOP56O00567 594 aaKnown RBP5.83□□□□□ -1.48
VPS41-209ENST00000457055 ERC2O15083 957 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 AHCYL1O43865 530 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 CTNND1O60716 968 aaKnown RBP5.83□□□□□ -1.48
VPS41-209ENST00000457055 CSPG5O95196 566 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 EYA4O95677 639 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 PLATP00750 562 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 THBDP07204 575 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 TPM1P09493 284 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 C6orf222P0C671 652 aaPredicted RBP5.83□□□□□ -1.48
VPS41-209ENST00000457055 TMEM11P17152 192 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 ARF4P18085 180 aaPredicted RBP5.83□□□□□ -1.48
VPS41-209ENST00000457055 SFPQP23246 707 aaKnown RBP eCLIP5.83□□□□□ -1.48
VPS41-209ENST00000457055 CCT8P50990 548 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 PSMD7P51665 324 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 CCNHP51946 323 aaPredicted RBP5.83□□□□□ -1.48
VPS41-209ENST00000457055 CD83Q01151 205 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 GBE1Q04446 702 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 DMPKQ09013 629 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 MMEL1Q495T6 779 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 PRR16Q569H4 304 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 RNF219Q5W0B1 726 aaPredicted RBP5.83□□□□□ -1.48
VPS41-209ENST00000457055 OTUD7BQ6GQQ9 843 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 RAB12Q6IQ22 244 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 LIN54Q6MZP7 749 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 CORO6Q6QEF8 472 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 MTHFD1LQ6UB35 978 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 CD300LDQ6UXZ3 194 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 ATG9AQ7Z3C6 839 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 ZC3H18Q86VM9 953 aaKnown RBP5.83□□□□□ -1.48
VPS41-209ENST00000457055 SPATA24Q86W54 205 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 MIB1Q86YT6 1006 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 CCDC83Q8IWF9 413 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 RPAP2Q8IXW5 612 aaPredicted RBP5.83□□□□□ -1.48
VPS41-209ENST00000457055 PDCL2Q8N4E4 241 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 CAMKK1Q8N5S9 505 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 MYCT1Q8N699 235 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 KYQ8NBH2 561 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 PCSK9Q8NBP7 692 aaKnown RBP5.83□□□□□ -1.48
VPS41-209ENST00000457055 SEC14L1Q92503 715 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 PPP1R14AQ96A00 147 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 LOXL4Q96JB6 756 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 PIGSQ96S52 555 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 TRIM5Q9C035 493 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 UPF2Q9HAU5 1272 aaKnown RBP5.83□□□□□ -1.48
VPS41-209ENST00000457055 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.83□□□□□ -1.48
VPS41-209ENST00000457055 XAB2Q9HCS7 855 aaKnown RBP5.83□□□□□ -1.48
VPS41-209ENST00000457055 MCM9Q9NXL9 1143 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms