RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 ZNF606Q8WXB4 792 aa11.7□□□□□ -0.54
SCN9A-205ENST00000454569 TMEM176AQ96HP8 235 aa11.7□□□□□ -0.54
SCN9A-205ENST00000454569 FAM81BQ96LP2 452 aa11.7□□□□□ -0.54
SCN9A-205ENST00000454569 ZBED2Q9BTP6 218 aa11.7□□□□□ -0.54
SCN9A-205ENST00000454569 TMUB1Q9BVT8 246 aa11.7□□□□□ -0.54
SCN9A-205ENST00000454569 COLEC11Q9BWP8 271 aa11.7□□□□□ -0.54
SCN9A-205ENST00000454569 CRTAC1Q9NQ79 661 aa11.7□□□□□ -0.54
SCN9A-205ENST00000454569 ZNHIT6Q9NWK9 470 aaKnown RBP11.7□□□□□ -0.54
SCN9A-205ENST00000454569 EPN1Q9Y6I3 576 aaPredicted RBP11.7□□□□□ -0.54
SCN9A-205ENST00000454569 SSU72P8A0A1W2PR75 194 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 THAP12O43422 761 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 NDUFA10O95299 355 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 CYP11A1P05108 521 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 OR4Q2P0C623 313 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 GNA15P30679 374 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 PPP1R26Q5T8A7 1209 aaPredicted RBP11.69□□□□□ -0.54
SCN9A-205ENST00000454569 FAM171A1Q5VUB5 890 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 DENND1BQ6P3S1 775 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 PAQR9Q6ZVX9 377 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 DPH6Q7L8W6 267 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 CEP57Q86XR8 500 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 PASD1Q8IV76 773 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 RNF168Q8IYW5 571 aaPredicted RBP11.69□□□□□ -0.54
SCN9A-205ENST00000454569 IGSF21Q96ID5 467 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 HEXIM2Q96MH2 286 aaKnown RBP11.69□□□□□ -0.54
SCN9A-205ENST00000454569 SLC9A7Q96T83 725 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 PHOX2BQ99453 314 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 RAD9AQ99638 391 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.69□□□□□ -0.54
SCN9A-205ENST00000454569 NT5C1AQ9BXI3 368 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 PACSIN1Q9BY11 444 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 FAM49BQ9NUQ9 324 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 TMLHEQ9NVH6 421 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 DDX43Q9NXZ2 648 aaKnown RBP11.69□□□□□ -0.54
SCN9A-205ENST00000454569 PUF60Q9UHX1 559 aaKnown RBP11.69□□□□□ -0.54
SCN9A-205ENST00000454569 CYTH4Q9UIA0 394 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 GREB1Q4ZG55 1949 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 TRANK1O15050 2925 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 REV3LO60673 3130 aa11.69□□□□□ -0.54
SCN9A-205ENST00000454569 ZNF638Q14966 1978 aaKnown RBP11.69□□□□□ -0.54
SCN9A-205ENST00000454569 MYBPHLA2RUH7 354 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 TMCO5BA8MYB1 307 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 CLDN5O00501 218 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 ARHGAP6O43182 974 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 TLL1O43897 1013 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 CCDC130P13994 396 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 CD19P15391 556 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 TNFAIP3P21580 790 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 FGFR3P22607 806 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 PBX2P40425 430 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 ALDH7A1P49419 539 aaKnown RBP11.68□□□□□ -0.54
SCN9A-205ENST00000454569 CDR2Q01850 454 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 C2CD6Q53TS8 623 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 PRSS55Q6UWB4 352 aaPredicted RBP11.68□□□□□ -0.54
SCN9A-205ENST00000454569 CRYBG2Q8N1P7 616 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 CCDC112Q8NEF3 446 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 PHOSPHO2Q8TCD6 241 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 CYFIP2Q96F07 1278 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 RNPC3Q96LT9 517 aaKnown RBP11.68□□□□□ -0.54
SCN9A-205ENST00000454569 CCDC42Q96M95 316 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 PKMYT1Q99640 499 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 RHOBTB2Q9BYZ6 727 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 SNX25Q9H3E2 840 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 TMEM30AQ9NV96 361 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 INSL6Q9Y581 213 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 ADGRG1Q9Y653 693 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 PLXNA3P51805 1871 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 DOCK6Q96HP0 2047 aa11.68□□□□□ -0.54
SCN9A-205ENST00000454569 EIF3CLB5ME19 914 aaKnown RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 TULP2O00295 520 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 NRDCO43847 1150 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 AKR1B10O60218 316 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 LCA5LO95447 670 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 PAEPP09466 180 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 ODC1P11926 461 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 PTPN1P18031 435 aaKnown RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 PDE6CP51160 858 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 MRPL58Q14197 206 aaKnown RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 VARS2Q5ST30 1063 aaKnown RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 OVOS1Q6IE37 1185 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 LLGL2Q6P1M3 1020 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 UNC93AQ86WB7 457 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 FIBCD1Q8N539 461 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 UBA3Q8TBC4 463 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 KIAA1524Q8TCG1 905 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 AUTS2Q8WXX7 1259 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 CLP1Q92989 425 aaKnown RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 ZNF558Q96NG5 402 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 EIF3CQ99613 913 aaKnown RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 C17orf80Q9BSJ5 609 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 UBE2OQ9C0C9 1292 aaKnown RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 SEPT11Q9NVA2 429 aaKnown RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 TRMT1Q9NXH9 659 aaKnown RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 TJP2Q9UDY2 1190 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 TRIM10Q9UDY6 481 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 NAGPAQ9UK23 515 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 GTF3C4Q9UKN8 822 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 YBX2Q9Y2T7 364 aaKnown RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 BZW2Q9Y6E2 419 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms