RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 CYP2C9P11712 490 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 PEX2P28328 305 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 MPLP40238 635 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 SLC13A2Q13183 592 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 CTBP1Q13363 440 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 CNGA2Q16280 664 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 PCSK4Q6UW60 755 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 Q6ZNX1 250 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 FAM109AQ8N4B1 249 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 SLC30A5Q8TAD4 765 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 NELL2Q99435 816 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 PCGF6Q9BYE7 350 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 RAMP2O60895 175 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 XRCC6P12956 609 aaKnown RBP eCLIP7□□□□□ -1.29
CCDC88A-206ENST00000430086 RPL17P18621 184 aaKnown RBP7□□□□□ -1.29
CCDC88A-206ENST00000430086 GNALP38405 381 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 SUMO3P55854 103 aaPredicted RBP7□□□□□ -1.29
CCDC88A-206ENST00000430086 LOXL3P58215 753 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 TGFB2P61812 414 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 FOXI1Q12951 378 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 MPP3Q13368 585 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 RAB32Q13637 225 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 CCDC181Q5TID7 509 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 KIAA0895LQ68EN5 471 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 DNAJC5GQ8N7S2 189 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 FBXO41Q8TF61 875 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 LPIN2Q92539 896 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 SLC9A6Q92581 669 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 MAML1Q92585 1016 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 CAVIN3Q969G5 261 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 NMD3Q96D46 503 aaKnown RBP7□□□□□ -1.29
CCDC88A-206ENST00000430086 SARGQ9BW04 601 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 AMBRA1Q9C0C7 1298 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 ZNF518BQ9C0D4 1074 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 STK32BQ9NY57 414 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 CPNE7Q9UBL6 633 aa7□□□□□ -1.29
CCDC88A-206ENST00000430086 BRAFP15056 766 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 PPP3CBP16298 524 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 ZNF134P52741 427 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 NXPH1P58417 271 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 FMO1Q01740 532 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 ITIH3Q06033 890 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 SLC44A4Q53GD3 710 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 RBM20Q5T481 1227 aaKnown RBP6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 SFRP4Q6FHJ7 346 aaPredicted RBP6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 LAYNQ6UX15 382 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 TMEM108Q6UXF1 575 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 KRT78Q8N1N4 520 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 SLC44A3Q8N4M1 653 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 SLC15A4Q8N697 577 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 PGBD1Q96JS3 809 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 MESP1Q9BRJ9 268 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 KRTAP4-5Q9BYR2 181 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 TTYH3Q9C0H2 523 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 BTBD1Q9H0C5 482 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 KIAA1586Q9HCI6 787 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 SHOC2Q9UQ13 582 aa6.99□□□□□ -1.29
CCDC88A-206ENST00000430086 A0A087X1B8 175 aa6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 TRIM43BA6NCK2 446 aa6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 YY2O15391 372 aa6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 PEX1O43933 1283 aa6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 TRIM27P14373 513 aa6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 PROZP22891 400 aa6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 CD6P30203 668 aa6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 ADRA1BP35368 520 aa6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 FOLR3P41439 243 aa6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 PXNP49023 591 aaPredicted RBP6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 HNRNPMP52272 730 aaKnown RBP eCLIP6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 PURAQ00577 322 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 PTPRRQ15256 657 aa6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 MICU3Q86XE3 530 aa6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 GAS2L3Q86XJ1 694 aa6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 B3GALNT2Q8NCR0 500 aa6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 TRIM43Q96BQ3 446 aaPredicted RBP6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 PTDSS2Q9BVG9 487 aa6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 NUP62CLQ9H1M0 184 aa6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 A1CFQ9NQ94 594 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 RGS17Q9UGC6 210 aaPredicted RBP6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 AFF4Q9UHB7 1163 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 WDR33Q9C0J8 1336 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-206ENST00000430086 MPPED1O15442 326 aa6.97□□□□□ -1.29
CCDC88A-206ENST00000430086 CAND2O75155 1236 aa6.97□□□□□ -1.29
CCDC88A-206ENST00000430086 PPIFP30405 207 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-206ENST00000430086 LRPAP1P30533 357 aa6.97□□□□□ -1.29
CCDC88A-206ENST00000430086 LILRA4P59901 499 aa6.97□□□□□ -1.29
CCDC88A-206ENST00000430086 NBPF8Q3BBV2 869 aa6.97□□□□□ -1.29
CCDC88A-206ENST00000430086 MYCBPAPQ8TBZ2 947 aa6.97□□□□□ -1.29
CCDC88A-206ENST00000430086 FAM136AQ96C01 138 aa6.97□□□□□ -1.29
CCDC88A-206ENST00000430086 CHFRQ96EP1 664 aa6.97□□□□□ -1.29
CCDC88A-206ENST00000430086 MSLNLQ96KJ4 702 aa6.97□□□□□ -1.29
CCDC88A-206ENST00000430086 IKZF4Q9H2S9 585 aa6.97□□□□□ -1.29
CCDC88A-206ENST00000430086 ZNF287Q9HBT7 754 aa6.97□□□□□ -1.29
CCDC88A-206ENST00000430086 OGDHLQ9ULD0 1010 aa6.97□□□□□ -1.29
CCDC88A-206ENST00000430086 PCDHGB6Q9Y5F9 930 aa6.97□□□□□ -1.29
CCDC88A-206ENST00000430086 DMRT1Q9Y5R6 373 aa6.97□□□□□ -1.29
CCDC88A-206ENST00000430086 MBD3L4A6NDZ8 208 aaPredicted RBP6.96□□□□□ -1.3
CCDC88A-206ENST00000430086 MBD3L3A6NE82 208 aaPredicted RBP6.96□□□□□ -1.3
CCDC88A-206ENST00000430086 PRC1O43663 620 aa6.96□□□□□ -1.3
CCDC88A-206ENST00000430086 SATB1Q01826 763 aa6.96□□□□□ -1.3
CCDC88A-206ENST00000430086 FSTL1Q12841 308 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms