RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 USTQ9Y2C2 406 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 CTDP1Q9Y5B0 961 aaPredicted RBP11.58□□□□□ -0.56
LIMS1-207ENST00000422797 PCDHAC2Q9Y5I4 1007 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 CLUHO75153 1309 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.57□□□□□ -0.56
LIMS1-207ENST00000422797 FAM170AA1A519 330 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 F8W8V4 182 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 SGK1O00141 431 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 NFIBO00712 420 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 CCNE2O96020 404 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 MT-ND3P03897 115 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 WEE2P0C1S8 567 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 GLRA2P23416 452 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 EPHB2P29323 1055 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 CDH5P33151 784 aaPredicted RBP11.57□□□□□ -0.56
LIMS1-207ENST00000422797 CDKN2BP42772 138 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 ARFIP2P53365 341 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 SH3BGRP55822 239 aaPredicted RBP11.57□□□□□ -0.56
LIMS1-207ENST00000422797 NOP14P78316 857 aaKnown RBP11.57□□□□□ -0.56
LIMS1-207ENST00000422797 SURF1Q15526 300 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 CTC1Q2NKJ3 1217 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 SPDYE2Q495Y8 402 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 C6orf163Q5TEZ5 329 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 TDRD10Q5VZ19 366 aaKnown RBP11.57□□□□□ -0.56
LIMS1-207ENST00000422797 PLA2G4FQ68DD2 849 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 ZNF449Q6P9G9 518 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 DCUN1D2Q6PH85 259 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 TMEM270Q6UE05 265 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 MFSD7Q6UXD7 560 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 BBS12Q6ZW61 710 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 SMC1BQ8NDV3 1235 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 FNIP1Q8TF40 1166 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 MCUR1Q96AQ8 359 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 PTCD3Q96EY7 689 aaKnown RBP11.57□□□□□ -0.56
LIMS1-207ENST00000422797 APOPT1Q96IL0 206 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 PRMT6Q96LA8 375 aaPredicted RBP11.57□□□□□ -0.56
LIMS1-207ENST00000422797 AGBL1Q96MI9 1066 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 TRAPPC9Q96Q05 1148 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 PAFAH2Q99487 392 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 PDCD2LQ9BRP1 358 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 PI4K2AQ9BTU6 479 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 TSSK1BQ9BXA7 367 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 FHDC1Q9C0D6 1143 aaPredicted RBP11.57□□□□□ -0.56
LIMS1-207ENST00000422797 DENND2DQ9H6A0 471 aaPredicted RBP11.57□□□□□ -0.56
LIMS1-207ENST00000422797 SLC38A10Q9HBR0 1119 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 NPHS2Q9NP85 383 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 SLCO1B3Q9NPD5 702 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 PXMP2Q9NR77 195 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.57□□□□□ -0.56
LIMS1-207ENST00000422797 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.57□□□□□ -0.56
LIMS1-207ENST00000422797 ZNF70Q9UC06 446 aaPredicted RBP11.57□□□□□ -0.56
LIMS1-207ENST00000422797 NKX1-2Q9UD57 310 aaPredicted RBP11.57□□□□□ -0.56
LIMS1-207ENST00000422797 ANGPTL2Q9UKU9 493 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 TRPC5Q9UL62 973 aaPredicted RBP11.57□□□□□ -0.56
LIMS1-207ENST00000422797 PCDHGC3Q9UN70 934 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 IKBKGQ9Y6K9 419 aa11.57□□□□□ -0.56
LIMS1-207ENST00000422797 TCRBV5S1A1TA0A578 114 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 GYG2O15488 501 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 DHRS4L1P0CG22 281 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 ATP4AP20648 1035 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 EIF4BP23588 611 aaKnown RBP11.56□□□□□ -0.56
LIMS1-207ENST00000422797 GJC1P36383 396 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 ABL2P42684 1182 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 CTCFP49711 727 aaPredicted RBP11.56□□□□□ -0.56
LIMS1-207ENST00000422797 MXRA7P84157 204 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 MAP3K10Q02779 954 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 ZBTB16Q05516 673 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 SLC34A1Q06495 639 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 ACAP1Q15027 740 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 LLGL1Q15334 1064 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 DLGAP5Q15398 846 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 TAZQ16635 292 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 XKR3Q5GH77 459 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 DAB2IPQ5VWQ8 1189 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 ANO7Q6IWH7 933 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 MTDHQ86UE4 582 aaKnown RBP11.56□□□□□ -0.56
LIMS1-207ENST00000422797 MFN1Q8IWA4 741 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 PALM2Q8IXS6 379 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 VPS52Q8N1B4 723 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 UBR7Q8N806 425 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 NAT8LQ8N9F0 302 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 MTMR14Q8NCE2 650 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 KCNV2Q8TDN2 545 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 ZFAND2BQ8WV99 257 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 BSNDQ8WZ55 320 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 ZNF516Q92618 1163 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 SKA1Q96BD8 255 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 ZNF333Q96JL9 665 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 SIKE1Q9BRV8 207 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 MAK16Q9BXY0 300 aaKnown RBP11.56□□□□□ -0.56
LIMS1-207ENST00000422797 FAM192AQ9GZU8 254 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.56□□□□□ -0.56
LIMS1-207ENST00000422797 MKS1Q9NXB0 559 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 RBAKQ9NYW8 714 aaPredicted RBP11.56□□□□□ -0.56
LIMS1-207ENST00000422797 WDR35Q9P2L0 1181 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 STX18Q9P2W9 335 aaKnown RBP11.56□□□□□ -0.56
LIMS1-207ENST00000422797 SCOCQ9UIL1 159 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 PSME4Q14997 1843 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 SCN9AQ15858 1988 aa11.56□□□□□ -0.56
LIMS1-207ENST00000422797 FOXO6A8MYZ6 492 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms