RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 CHST12Q9NRB3 414 aa11.24□□□□□ -0.61
PTCH1-206ENST00000421141 COL16A1Q07092 1604 aaPredicted RBP11.24□□□□□ -0.61
PTCH1-206ENST00000421141 CNTNAP2Q9UHC6 1331 aa11.24□□□□□ -0.61
PTCH1-206ENST00000421141 MAPK13O15264 365 aa11.24□□□□□ -0.61
PTCH1-206ENST00000421141 ARSEP51690 589 aa11.24□□□□□ -0.61
PTCH1-206ENST00000421141 KCNA10Q16322 511 aa11.24□□□□□ -0.61
PTCH1-206ENST00000421141 TMEM86AQ8N2M4 240 aa11.24□□□□□ -0.61
PTCH1-206ENST00000421141 KIF2CQ99661 725 aa11.24□□□□□ -0.61
PTCH1-206ENST00000421141 TLR2O60603 784 aa11.24□□□□□ -0.61
PTCH1-206ENST00000421141 DUSP11O75319 330 aaKnown RBP11.24□□□□□ -0.61
PTCH1-206ENST00000421141 RECQL4O94761 1208 aa11.24□□□□□ -0.61
PTCH1-206ENST00000421141 CRYBB1P53674 252 aaPredicted RBP11.24□□□□□ -0.61
PTCH1-206ENST00000421141 SLC7A5Q01650 507 aa11.24□□□□□ -0.61
PTCH1-206ENST00000421141 MTHFD1LQ6UB35 978 aa11.24□□□□□ -0.61
PTCH1-206ENST00000421141 SYDE1Q6ZW31 735 aaPredicted RBP11.24□□□□□ -0.61
PTCH1-206ENST00000421141 FEZF2Q8TBJ5 459 aa11.24□□□□□ -0.61
PTCH1-206ENST00000421141 SPATA18Q8TC71 538 aa11.24□□□□□ -0.61
PTCH1-206ENST00000421141 RPRD1AQ96P16 312 aaPredicted RBP11.24□□□□□ -0.61
PTCH1-206ENST00000421141 PRDM10Q9NQV6 1147 aa11.24□□□□□ -0.61
PTCH1-206ENST00000421141 SLITRK3O94933 977 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 EFEMP1Q12805 493 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 DBN1Q16643 649 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 TIGD7Q6NT04 549 aaPredicted RBP11.23□□□□□ -0.61
PTCH1-206ENST00000421141 ZBTB18Q99592 522 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 CBWD1Q9BRT8 395 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 UBXN6Q9BZV1 441 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 ATXN3LQ9H3M9 355 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 SETSIPP0DME0 302 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 CCT5P48643 541 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 DUSP28Q4G0W2 176 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 SPIRE2Q8WWL2 714 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 BST2Q10589 180 aaKnown RBP11.23□□□□□ -0.61
PTCH1-206ENST00000421141 PCSK7Q16549 785 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 HIF1AQ16665 826 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 DMAP1Q9NPF5 467 aaPredicted RBP11.23□□□□□ -0.61
PTCH1-206ENST00000421141 SLC45A1Q9Y2W3 748 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 MYH14Q7Z406 1995 aaKnown RBP11.23□□□□□ -0.61
PTCH1-206ENST00000421141 PRPF4O43172 522 aaKnown RBP eCLIP11.23□□□□□ -0.61
PTCH1-206ENST00000421141 ADH1AP07327 375 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 FGFR4P22455 802 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 WEE1P30291 646 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 ANGPTL8Q6UXH0 198 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 CBWD2Q8IUF1 395 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 IL25Q9H293 177 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.23□□□□□ -0.61
PTCH1-206ENST00000421141 DDX20Q9UHI6 824 aaKnown RBP11.23□□□□□ -0.61
PTCH1-206ENST00000421141 SLC30A1Q9Y6M5 507 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 A0A1W2PQJ5 194 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 KRT14P02533 472 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 MLH1P40692 756 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 NDUFV1P49821 464 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 PKN2Q16513 984 aaKnown RBP11.23□□□□□ -0.61
PTCH1-206ENST00000421141 TFB1MQ8WVM0 346 aaKnown RBP11.23□□□□□ -0.61
PTCH1-206ENST00000421141 RNPC3Q96LT9 517 aaKnown RBP11.23□□□□□ -0.61
PTCH1-206ENST00000421141 AGAP3Q96P47 875 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 KPNA7A9QM74 516 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 RASGRF2O14827 1237 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 NTRK3Q16288 839 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 NBPF20Q3BBV1 942 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 NOMO2Q5JPE7 1267 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 USP49Q70CQ1 688 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 LINC00523Q86TU6 105 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 TMC2Q8TDI7 906 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 RAB23Q9ULC3 237 aa11.23□□□□□ -0.61
PTCH1-206ENST00000421141 SSU72P8A0A1W2PR75 194 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 SLC9A3R1O14745 358 aaPredicted RBP11.22□□□□□ -0.61
PTCH1-206ENST00000421141 MYO1DO94832 1006 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 SYF2O95926 243 aaKnown RBP11.22□□□□□ -0.61
PTCH1-206ENST00000421141 EPHB2P29323 1055 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 SLC12A3P55017 1021 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 OCRLQ01968 901 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 CCDC60Q8IWA6 550 aaPredicted RBP11.22□□□□□ -0.61
PTCH1-206ENST00000421141 TRIM59Q8IWR1 403 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 LRRC43Q8N309 656 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 SYT15Q9BQS2 421 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 CELF4Q9BZC1 486 aaKnown RBP11.22□□□□□ -0.61
PTCH1-206ENST00000421141 ZNF518BQ9C0D4 1074 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 TMEM117Q9H0C3 514 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 ATP9BO43861 1147 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 TTC4O95801 387 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 POU5F1BQ06416 359 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 MYBPC2Q14324 1141 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 RBBP7Q16576 425 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 SLFN11Q7Z7L1 901 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 CIPCQ9C0C6 399 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 KLHL11Q9NVR0 708 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 KBTBD4Q9NVX7 518 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 A0A1B0GTH6 734 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 TEX33O43247 280 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 FBXW4P57775 412 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 KIF19Q2TAC6 998 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 ABRAQ8N0Z2 381 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 SYN2Q92777 582 aaPredicted RBP11.22□□□□□ -0.61
PTCH1-206ENST00000421141 CISHQ9NSE2 258 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 FRMPD4Q14CM0 1322 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 COPEO14579 308 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 ZNF197O14709 1029 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 RAP1GAPP47736 663 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 ACAD10Q6JQN1 1059 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 C4orf22Q6V702 233 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms