RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 ISCUQ9H1K1 167 aa6.33□□□□□ -1.4
HMGB3-202ENST00000419110 ELAC1Q9H777 363 aaKnown RBP6.33□□□□□ -1.4
HMGB3-202ENST00000419110 SYNCQ9H7C4 482 aa6.33□□□□□ -1.4
HMGB3-202ENST00000419110 PRDM5Q9NQX1 630 aaPredicted RBP6.33□□□□□ -1.4
HMGB3-202ENST00000419110 GDAP2Q9NXN4 497 aa6.33□□□□□ -1.4
HMGB3-202ENST00000419110 KANSL3Q9P2N6 904 aa6.33□□□□□ -1.4
HMGB3-202ENST00000419110 HESX1Q9UBX0 185 aa6.33□□□□□ -1.4
HMGB3-202ENST00000419110 CNOT8Q9UFF9 292 aaKnown RBP6.33□□□□□ -1.4
HMGB3-202ENST00000419110 HMGXB4Q9UGU5 601 aa6.33□□□□□ -1.4
HMGB3-202ENST00000419110 DSEQ9UL01 958 aa6.33□□□□□ -1.4
HMGB3-202ENST00000419110 KIAA1257Q9ULG3 409 aa6.33□□□□□ -1.4
HMGB3-202ENST00000419110 L1RE1Q9UN81 338 aa6.33□□□□□ -1.4
HMGB3-202ENST00000419110 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.33□□□□□ -1.4
HMGB3-202ENST00000419110 TFR2Q9UP52 801 aa6.33□□□□□ -1.4
HMGB3-202ENST00000419110 JRKLQ9Y4A0 524 aa6.33□□□□□ -1.4
HMGB3-202ENST00000419110 OBSL1O75147 1896 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 PLXNA4Q9HCM2 1894 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 GRID2IPA4D2P6 1211 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 A8MXQ7 604 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 O00370 1275 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 NBNO60934 754 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 EFCAB14O75071 495 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 PALMO75781 387 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 MTA2O94776 668 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 MICAL2O94851 1124 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 POMCP01189 267 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 CXCL10P02778 98 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 FTLP02792 175 aaPredicted RBP6.32□□□□□ -1.4
HMGB3-202ENST00000419110 CYP1A1P04798 512 aaPredicted RBP6.32□□□□□ -1.4
HMGB3-202ENST00000419110 PFKMP08237 780 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 TCP1P17987 556 aaKnown RBP6.32□□□□□ -1.4
HMGB3-202ENST00000419110 WARSP23381 471 aaKnown RBP6.32□□□□□ -1.4
HMGB3-202ENST00000419110 PCSK1P29120 753 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 CDH5P33151 784 aaPredicted RBP6.32□□□□□ -1.4
HMGB3-202ENST00000419110 RAD23BP54727 409 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 HADHBP55084 474 aaKnown RBP6.32□□□□□ -1.4
HMGB3-202ENST00000419110 CDH8P55286 799 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 SLC8A3P57103 927 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 SNX16P57768 344 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 LILRA4P59901 499 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 GPC5P78333 572 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 TAP1Q03518 808 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 PDCLQ13371 301 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 ORC1Q13415 861 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 WHAMMP3Q1A5X7 153 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 CLLU1OSQ5K130 101 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 CCDC181Q5TID7 509 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 ACAD10Q6JQN1 1059 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 DSTYKQ6XUX3 929 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 MMS22LQ6ZRQ5 1243 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 DPH6Q7L8W6 267 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 PEX26Q7Z412 305 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 DAAM2Q86T65 1068 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 METTL23Q86XA0 190 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 PHF13Q86YI8 300 aaPredicted RBP6.32□□□□□ -1.4
HMGB3-202ENST00000419110 PDCL2Q8N4E4 241 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 SLC4A11Q8NBS3 891 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 DBF4BQ8NFT6 615 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 OR6B3Q8NGW1 331 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 TPCN2Q8NHX9 752 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 ZNF606Q8WXB4 792 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 ARHGEF26Q96DR7 871 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 SCLYQ96I15 445 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 VCPIP1Q96JH7 1222 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 TWNKQ96RR1 684 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 PCDHB18PQ96TA0 734 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 SYT15Q9BQS2 421 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 MRPL45Q9BRJ2 306 aaKnown RBP6.32□□□□□ -1.4
HMGB3-202ENST00000419110 NUP85Q9BW27 656 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 THAP2Q9H0W7 228 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 MRPL47Q9HD33 250 aaKnown RBP6.32□□□□□ -1.4
HMGB3-202ENST00000419110 ACP6Q9NPH0 428 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 FAM49BQ9NUQ9 324 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 TMEM39AQ9NV64 488 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 TAS2R14Q9NYV8 317 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 ADAM22Q9P0K1 906 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 TSPAN16Q9UKR8 245 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 PCDHB7Q9Y5E2 793 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 MRFAP1Q9Y605 127 aa6.32□□□□□ -1.4
HMGB3-202ENST00000419110 DNAH12Q6ZR08 3092 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 SF3B1O75533 1304 aaKnown RBP eCLIP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 HELZP42694 1942 aaKnown RBP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 COL4A4P53420 1690 aaPredicted RBP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 UQCRHLA0A096LP55 91 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 CARNS1A5YM72 827 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 TMEM110-MUSTN1A8MSY1 372 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 MIF4GDA9UHW6 222 aaKnown RBP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 TMEM189-UBE2V1I3L0A0 370 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 CYB561D2O14569 222 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 TRAPPC3O43617 180 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 SPOPO43791 374 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 SLU7O95391 586 aaKnown RBP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 FTCDO95954 541 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 CALCAP01258 141 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 ATP1A1P05023 1023 aaKnown RBP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 CYP1A2P05177 515 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 UQCRHP07919 91 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 FAM163BP0C2L3 166 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 FGFR1P11362 822 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 UNGP13051 313 aaPredicted RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms