RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 FAXDC2Q96IV6 333 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 ZNF512Q96ME7 567 aaPredicted RBP23.2■■□□□ 1.3
CLN3-207ENST00000395653 SEPT5Q99719 369 aaPredicted RBP23.2■■□□□ 1.3
CLN3-207ENST00000395653 BCO2Q9BYV7 579 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 NIF3L1Q9GZT8 377 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 SDCBP2Q9H190 292 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 APOBEC3GQ9HC16 384 aaKnown RBP23.2■■□□□ 1.3
CLN3-207ENST00000395653 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.2■■□□□ 1.3
CLN3-207ENST00000395653 CEP72Q9P209 647 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 A8MXQ7 604 aa23.19■■□□□ 1.3
CLN3-207ENST00000395653 PMM2O15305 246 aa23.19■■□□□ 1.3
CLN3-207ENST00000395653 N4BP1O75113 896 aaKnown RBP23.19■■□□□ 1.3
CLN3-207ENST00000395653 HAPLN1P10915 354 aaPredicted RBP23.19■■□□□ 1.3
CLN3-207ENST00000395653 FSHRP23945 695 aa23.19■■□□□ 1.3
CLN3-207ENST00000395653 RAP1GAPP47736 663 aa23.19■■□□□ 1.3
CLN3-207ENST00000395653 EPHB3P54753 998 aa23.19■■□□□ 1.3
CLN3-207ENST00000395653 PSMC1P62191 440 aaKnown RBP23.19■■□□□ 1.3
CLN3-207ENST00000395653 NTHL1P78549 312 aa23.19■■□□□ 1.3
CLN3-207ENST00000395653 MGAT5BQ3V5L5 792 aa23.19■■□□□ 1.3
CLN3-207ENST00000395653 CFAP221Q4G0U5 840 aa23.19■■□□□ 1.3
CLN3-207ENST00000395653 C4orf50Q6ZRC1 276 aa23.19■■□□□ 1.3
CLN3-207ENST00000395653 ZDHHC14Q8IZN3 488 aa23.19■■□□□ 1.3
CLN3-207ENST00000395653 CYP3A43Q9HB55 503 aa23.19■■□□□ 1.3
CLN3-207ENST00000395653 CRTAC1Q9NQ79 661 aa23.19■■□□□ 1.3
CLN3-207ENST00000395653 ASB3Q9Y575 518 aa23.19■■□□□ 1.3
CLN3-207ENST00000395653 ATP2C2O75185 946 aa23.18■■□□□ 1.3
CLN3-207ENST00000395653 LRRN2O75325 713 aa23.18■■□□□ 1.3
CLN3-207ENST00000395653 RHOP08100 348 aa23.18■■□□□ 1.3
CLN3-207ENST00000395653 FMO5P49326 533 aa23.18■■□□□ 1.3
CLN3-207ENST00000395653 CCDC142Q17RM4 750 aa23.18■■□□□ 1.3
CLN3-207ENST00000395653 GET4Q7L5D6 327 aaPredicted RBP23.18■■□□□ 1.3
CLN3-207ENST00000395653 SPATA2LQ8IUW3 424 aaPredicted RBP23.18■■□□□ 1.3
CLN3-207ENST00000395653 LEMD2Q8NC56 503 aa23.18■■□□□ 1.3
CLN3-207ENST00000395653 MYCBPAPQ8TBZ2 947 aa23.18■■□□□ 1.3
CLN3-207ENST00000395653 CORO1BQ9BR76 489 aa23.18■■□□□ 1.3
CLN3-207ENST00000395653 DNAJC25Q9H1X3 360 aa23.18■■□□□ 1.3
CLN3-207ENST00000395653 P4HA2O15460 535 aa23.17■■□□□ 1.3
CLN3-207ENST00000395653 SOAT2O75908 522 aa23.17■■□□□ 1.3
CLN3-207ENST00000395653 EPHA5P54756 1037 aa23.17■■□□□ 1.3
CLN3-207ENST00000395653 WDR44Q5JSH3 913 aa23.17■■□□□ 1.3
CLN3-207ENST00000395653 SASS6Q6UVJ0 657 aa23.17■■□□□ 1.3
CLN3-207ENST00000395653 RNF135Q8IUD6 432 aa23.17■■□□□ 1.3
CLN3-207ENST00000395653 MYLPFQ96A32 169 aa23.17■■□□□ 1.3
CLN3-207ENST00000395653 CNOT6LQ96LI5 555 aaKnown RBP23.17■■□□□ 1.3
CLN3-207ENST00000395653 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.17■■□□□ 1.36e-9■■■■■ 134.6
CLN3-207ENST00000395653 TMEM63CQ9P1W3 806 aa23.17■■□□□ 1.3
CLN3-207ENST00000395653 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.17■■□□□ 1.3
CLN3-207ENST00000395653 ZFP37Q9Y6Q3 630 aaPredicted RBP23.17■■□□□ 1.3
CLN3-207ENST00000395653 PTPN1P18031 435 aaKnown RBP23.16■■□□□ 1.3
CLN3-207ENST00000395653 ATF6P18850 670 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 GBP2P32456 591 aaPredicted RBP23.16■■□□□ 1.3
CLN3-207ENST00000395653 CDR1P51861 262 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 INCA1Q0VD86 236 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 TPD52L1Q16890 204 aaPredicted RBP23.16■■□□□ 1.3
CLN3-207ENST00000395653 ITIH5Q86UX2 942 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 UNC93AQ86WB7 457 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 PSMG2Q969U7 264 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 TNIP3Q96KP6 325 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 MYADMQ96S97 322 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 DPEP3Q9H4B8 488 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 THAP9Q9H5L6 903 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 ASAH2Q9NR71 780 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 EPS15L1Q9UBC2 864 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 MRPS23Q9Y3D9 190 aaKnown RBP23.16■■□□□ 1.3
CLN3-207ENST00000395653 PTMSP20962 102 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 MAGEA11P43364 429 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 CETN1Q12798 172 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 KCNH2Q12809 1159 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 VEPH1Q14D04 833 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 MDH1BQ5I0G3 518 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 CYP4A22Q5TCH4 519 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 PDZD4Q76G19 769 aaPredicted RBP23.16■■□□□ 1.3
CLN3-207ENST00000395653 IRF2BP1Q8IU81 584 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 B3GALNT2Q8NCR0 500 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 ITFG1Q8TB96 612 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 PCED1BQ96HM7 432 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 FAM124BQ9H5Z6 455 aaPredicted RBP23.16■■□□□ 1.3
CLN3-207ENST00000395653 ANO10Q9NW15 660 aa23.16■■□□□ 1.3
CLN3-207ENST00000395653 MAGEC2Q9UBF1 373 aaPredicted RBP23.16■■□□□ 1.3
CLN3-207ENST00000395653 NOTCH4Q99466 2003 aa23.15■■□□□ 1.3
CLN3-207ENST00000395653 ZNF197O14709 1029 aa23.15■■□□□ 1.3
CLN3-207ENST00000395653 MICAL2O94851 1124 aa23.15■■□□□ 1.3
CLN3-207ENST00000395653 AFPP02771 609 aaKnown RBP23.15■■□□□ 1.3
CLN3-207ENST00000395653 CYP2F1P24903 491 aa23.15■■□□□ 1.3
CLN3-207ENST00000395653 RPL10AP62906 217 aaKnown RBP23.15■■□□□ 1.3
CLN3-207ENST00000395653 SLC5A9Q2M3M2 681 aa23.15■■□□□ 1.3
CLN3-207ENST00000395653 PRSS36Q5K4E3 855 aa23.15■■□□□ 1.3
CLN3-207ENST00000395653 VSTM1Q6UX27 236 aa23.15■■□□□ 1.3
CLN3-207ENST00000395653 TTC39CQ8N584 583 aa23.15■■□□□ 1.3
CLN3-207ENST00000395653 LRRC3Q9BY71 257 aa23.15■■□□□ 1.3
CLN3-207ENST00000395653 CDH7Q9ULB5 785 aa23.15■■□□□ 1.3
CLN3-207ENST00000395653 LAMP2P13473 410 aa23.14■■□□□ 1.29
CLN3-207ENST00000395653 NDST1P52848 882 aa23.14■■□□□ 1.29
CLN3-207ENST00000395653 CYP27A1Q02318 531 aa23.14■■□□□ 1.29
CLN3-207ENST00000395653 STX1AQ16623 288 aa23.14■■□□□ 1.29
CLN3-207ENST00000395653 DNAJB7Q7Z6W7 309 aaPredicted RBP23.14■■□□□ 1.29
CLN3-207ENST00000395653 TMC8Q8IU68 726 aa23.14■■□□□ 1.29
CLN3-207ENST00000395653 FAM114A1Q8IWE2 563 aa23.14■■□□□ 1.29
CLN3-207ENST00000395653 HS6ST3Q8IZP7 471 aa23.14■■□□□ 1.29
CLN3-207ENST00000395653 FAM200AQ8TCP9 573 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms