RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 MYCLP12524 364 aaPredicted RBP19.41■□□□□ 0.7
CCDC3-201ENST00000378825 GNA15P30679 374 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 NEK3P51956 506 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 MTMR1Q13613 665 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 OASLQ15646 514 aaKnown RBP19.41■□□□□ 0.7
CCDC3-201ENST00000378825 HIF1AQ16665 826 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 SMTNL2Q2TAL5 461 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 PLEKHA7Q6IQ23 1121 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 ALYREFQ86V81 257 aaKnown RBP19.41■□□□□ 0.7
CCDC3-201ENST00000378825 SHKBP1Q8TBC3 707 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 TMC2Q8TDI7 906 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 TTC25Q96NG3 672 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 MCEEQ96PE7 176 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 STOML1Q9UBI4 398 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 AHCYL1O43865 530 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 SNUPNO95149 360 aaKnown RBP19.41■□□□□ 0.7
CCDC3-201ENST00000378825 VNN1O95497 513 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 BGNP21810 368 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 RAB27AP51159 221 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 SLC18A1P54219 525 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 PSMC5P62195 406 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 SP4Q02446 784 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 DMP1Q13316 513 aaPredicted RBP19.41■□□□□ 0.7
CCDC3-201ENST00000378825 SEPT7Q16181 437 aaKnown RBP19.41■□□□□ 0.7
CCDC3-201ENST00000378825 SEZ6Q53EL9 994 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 BRDTQ58F21 947 aaPredicted RBP19.41■□□□□ 0.7
CCDC3-201ENST00000378825 SPOCD1Q6ZMY3 1216 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 LRRC74BQ6ZQY2 392 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 CENPUQ71F23 418 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 TAS1R3Q7RTX0 852 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 FBXO41Q8TF61 875 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 CHURC1Q8WUH1 139 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 BICD1Q96G01 975 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 CLPTM1LQ96KA5 538 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 ZNF395Q9H8N7 513 aaPredicted RBP19.41■□□□□ 0.7
CCDC3-201ENST00000378825 CCPG1Q9ULG6 757 aa19.41■□□□□ 0.7
CCDC3-201ENST00000378825 CCDC22O60826 627 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 NPTXRO95502 500 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 ITGBL1O95965 494 aaPredicted RBP19.4■□□□□ 0.7
CCDC3-201ENST00000378825 TROVE2P10155 538 aaKnown RBP eCLIP19.4■□□□□ 0.7
CCDC3-201ENST00000378825 NLRP11P59045 1033 aaKnown RBP19.4■□□□□ 0.7
CCDC3-201ENST00000378825 ZBTB16Q05516 673 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 MORF4L2Q15014 288 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 LIN9Q5TKA1 542 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 IGDCC3Q8IVU1 814 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 FEZF2Q8TBJ5 459 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 RNF217Q8TC41 542 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 TTC17Q96AE7 1141 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 FAM111AQ96PZ2 611 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 EHMT1Q9H9B1 1298 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 SAR1AQ9NR31 198 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 ZNF646O15015 1829 aaPredicted RBP19.4■□□□□ 0.7
CCDC3-201ENST00000378825 FAM237BA0A1B0GVD1 139 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 PSMG1O95456 288 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 UBTFL6P0CB48 400 aaPredicted RBP19.4■□□□□ 0.7
CCDC3-201ENST00000378825 POLE2P56282 527 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 THOC5Q13769 683 aaKnown RBP19.4■□□□□ 0.7
CCDC3-201ENST00000378825 KCNT1Q5JUK3 1230 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 ABRAQ8N0Z2 381 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 VPS52Q8N1B4 723 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 GPD1LQ8N335 351 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 FBXO36Q8NEA4 188 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 PYROXD1Q8WU10 500 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 SERAC1Q96JX3 654 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 TSSK1BQ9BXA7 367 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 KRT82Q9NSB4 513 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 SENP1Q9P0U3 644 aa19.4■□□□□ 0.7
CCDC3-201ENST00000378825 ARFIP2P53365 341 aa19.39■□□□□ 0.7
CCDC3-201ENST00000378825 VCPP55072 806 aaKnown RBP19.39■□□□□ 0.7
CCDC3-201ENST00000378825 BBS9Q3SYG4 887 aa19.39■□□□□ 0.7
CCDC3-201ENST00000378825 ZNF394Q53GI3 561 aa19.39■□□□□ 0.7
CCDC3-201ENST00000378825 C15orf39Q6ZRI6 1047 aa19.39■□□□□ 0.7
CCDC3-201ENST00000378825 BANPQ8N9N5 519 aa19.39■□□□□ 0.7
CCDC3-201ENST00000378825 CPT1BQ92523 772 aa19.39■□□□□ 0.7
CCDC3-201ENST00000378825 MCUR1Q96AQ8 359 aa19.39■□□□□ 0.7
CCDC3-201ENST00000378825 ZBTB45Q96K62 511 aaPredicted RBP19.39■□□□□ 0.7
CCDC3-201ENST00000378825 NMUR2Q9GZQ4 415 aa19.39■□□□□ 0.7
CCDC3-201ENST00000378825 ZNF541Q9H0D2 1346 aa19.39■□□□□ 0.69
CCDC3-201ENST00000378825 TMEM63AO94886 807 aa19.39■□□□□ 0.69
CCDC3-201ENST00000378825 ZWINTO95229 277 aa19.39■□□□□ 0.69
CCDC3-201ENST00000378825 LBRQ14739 615 aaKnown RBP19.39■□□□□ 0.69
CCDC3-201ENST00000378825 SGSM1Q2NKQ1 1148 aa19.39■□□□□ 0.69
CCDC3-201ENST00000378825 CWF19L1Q69YN2 538 aaKnown RBP19.39■□□□□ 0.69
CCDC3-201ENST00000378825 DCAKDQ8WVC6 231 aa19.39■□□□□ 0.69
CCDC3-201ENST00000378825 IFT43Q96FT9 208 aa19.39■□□□□ 0.69
CCDC3-201ENST00000378825 NSL1Q96IY1 281 aa19.39■□□□□ 0.69
CCDC3-201ENST00000378825 TAAR1Q96RJ0 339 aa19.39■□□□□ 0.69
CCDC3-201ENST00000378825 ARHGEF4Q9NR80 690 aa19.39■□□□□ 0.69
CCDC3-201ENST00000378825 GINM1Q9NU53 330 aa19.39■□□□□ 0.69
CCDC3-201ENST00000378825 SLC24A2Q9UI40 661 aa19.39■□□□□ 0.69
CCDC3-201ENST00000378825 EXOC7Q9UPT5 735 aa19.39■□□□□ 0.69
CCDC3-201ENST00000378825 ZNF536O15090 1300 aa19.39■□□□□ 0.69
CCDC3-201ENST00000378825 KCNA3P22001 575 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 SKA1Q96BD8 255 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 SENP7Q9BQF6 1050 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 MECRQ9BV79 373 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 ZNF341Q9BYN7 854 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 TRIM55Q9BYV6 548 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 LOXHD1Q8IVV2 1947 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 hCG_1818297A0A087WSY0 165 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms