RNA–Protein interactions for RNA: ENST00000358528.8

CSDE1-203, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSDE1, Length 4,076 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-203ENST00000358528 COL20A1Q9P218 1284 aa6.9□□□□□ -1.31
CSDE1-203ENST00000358528 FBXO40Q9UH90 709 aa6.9□□□□□ -1.31
CSDE1-203ENST00000358528 STARD13Q9Y3M8 1113 aa6.9□□□□□ -1.31
CSDE1-203ENST00000358528 UMODL1Q5DID0 1318 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 LIASO43766 372 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 PSAPP07602 524 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 ZBTB48P10074 688 aaPredicted RBP6.89□□□□□ -1.31
CSDE1-203ENST00000358528 ELK3P41970 407 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 IGBP1P78318 339 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 PDE1BQ01064 536 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 PRKCEQ02156 737 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 SIX1Q15475 284 aaPredicted RBP6.89□□□□□ -1.31
CSDE1-203ENST00000358528 TXNRD3NBQ6F5E7 133 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 TTC7BQ86TV6 843 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 PRPF39Q86UA1 669 aaKnown RBP6.89□□□□□ -1.31
CSDE1-203ENST00000358528 ABRAQ8N0Z2 381 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 TMEM161BQ8NDZ6 487 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 BSNDQ8WZ55 320 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 RANBP17Q9H2T7 1088 aaKnown RBP6.89□□□□□ -1.31
CSDE1-203ENST00000358528 CCDC134Q9H6E4 229 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 TMX2Q9Y320 296 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 FCHO1O14526 889 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 DKC1O60832 514 aaKnown RBP eCLIP6.89□□□□□ -1.31
CSDE1-203ENST00000358528 PEX11AO75192 247 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 AVILO75366 819 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 ASMTLO95671 621 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 ZBED1O96006 694 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 CALB1P05937 261 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 ASNSP08243 561 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 TPBGLP0DKB5 382 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 DESP17661 470 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 GPC3P51654 580 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 ZNF200P98182 395 aaPredicted RBP6.89□□□□□ -1.31
CSDE1-203ENST00000358528 GTF2BQ00403 316 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 FAAP100Q0VG06 881 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 SPP2Q13103 211 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 PSMD6Q15008 389 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 RASA2Q15283 850 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 CHI3L2Q15782 390 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 TFDP3Q5H9I0 405 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 RSPH3Q86UC2 560 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 CRLF3Q8IUI8 442 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 POU5F2Q8N7G0 328 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 MCPH1Q8NEM0 835 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 CD101Q93033 1021 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 CLPTM1LQ96KA5 538 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 NLRP4Q96MN2 994 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 MTMR12Q9C0I1 747 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 PIH1D1Q9NWS0 290 aaKnown RBP6.89□□□□□ -1.31
CSDE1-203ENST00000358528 NMRK1Q9NWW6 199 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 NDE1Q9NXR1 346 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 ANGPTL2Q9UKU9 493 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 NENFQ9UMX5 172 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 C2CD2Q9Y426 696 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.89□□□□□ -1.31
CSDE1-203ENST00000358528 ADGRA3Q8IWK6 1321 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 IRS2Q9Y4H2 1338 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 NAV1Q8NEY1 1877 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 KCNN4O15554 427 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 KRT37O76014 449 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 FDX1P10109 184 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 GLRA2P23416 452 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 RAP1GAPP47736 663 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 PAPOLAP51003 745 aaKnown RBP6.89□□□□□ -1.31
CSDE1-203ENST00000358528 CACNA2D1P54289 1103 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 VCPP55072 806 aaKnown RBP6.89□□□□□ -1.31
CSDE1-203ENST00000358528 BLMHQ13867 455 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 ZNF699Q32M78 642 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 CRY2Q49AN0 593 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 ZBTB41Q5SVQ8 909 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 C1orf220Q5T0J3 134 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 ANKRD22Q5VYY1 191 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 SNRNP48Q6IEG0 339 aaKnown RBP6.89□□□□□ -1.31
CSDE1-203ENST00000358528 CGB2Q6NT52 195 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 CLNKQ7Z7G1 428 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 ALYREFQ86V81 257 aaKnown RBP6.89□□□□□ -1.31
CSDE1-203ENST00000358528 TEX9Q8N6V9 391 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 EFCAB3Q8N7B9 438 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 SYT11Q9BT88 431 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 LRMDAQ9H2I8 198 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 GPATCH2LQ9NWQ4 482 aa6.89□□□□□ -1.31
CSDE1-203ENST00000358528 HERC5Q9UII4 1024 aaKnown RBP6.89□□□□□ -1.31
CSDE1-203ENST00000358528 ASTN2O75129 1339 aaPredicted RBP6.89□□□□□ -1.31
CSDE1-203ENST00000358528 CFLARO15519 480 aa6.88□□□□□ -1.31
CSDE1-203ENST00000358528 SMNDC1O75940 238 aaKnown RBP eCLIP6.88□□□□□ -1.31
CSDE1-203ENST00000358528 FAM155BO75949 473 aa6.88□□□□□ -1.31
CSDE1-203ENST00000358528 TNNC2P02585 160 aa6.88□□□□□ -1.31
CSDE1-203ENST00000358528 NR3C2P08235 984 aa6.88□□□□□ -1.31
CSDE1-203ENST00000358528 CCND2P30279 289 aa6.88□□□□□ -1.31
CSDE1-203ENST00000358528 MYBPC2Q14324 1141 aa6.88□□□□□ -1.31
CSDE1-203ENST00000358528 MORF4L2Q15014 288 aa6.88□□□□□ -1.31
CSDE1-203ENST00000358528 WDR72Q3MJ13 1102 aa6.88□□□□□ -1.31
CSDE1-203ENST00000358528 FAM102AQ5T9C2 384 aaPredicted RBP6.88□□□□□ -1.31
CSDE1-203ENST00000358528 PRAMEF18Q5VWM3 479 aa6.88□□□□□ -1.31
CSDE1-203ENST00000358528 TDRD10Q5VZ19 366 aaKnown RBP6.88□□□□□ -1.31
CSDE1-203ENST00000358528 LRRC74BQ6ZQY2 392 aa6.88□□□□□ -1.31
CSDE1-203ENST00000358528 RASSF3Q86WH2 238 aa6.88□□□□□ -1.31
CSDE1-203ENST00000358528 PPIL6Q8IXY8 311 aa6.88□□□□□ -1.31
CSDE1-203ENST00000358528 SYTL5Q8TDW5 730 aaPredicted RBP6.88□□□□□ -1.31
CSDE1-203ENST00000358528 DEPDC1BQ8WUY9 529 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms