RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 FIBCD1Q8N539 461 aa2.54□□□□□ -2
VPS54-202ENST00000354504 TOP6BLQ8N6T0 577 aa2.54□□□□□ -2
VPS54-202ENST00000354504 TMEM161BQ8NDZ6 487 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CCDC148Q8NFR7 591 aa2.54□□□□□ -2
VPS54-202ENST00000354504 ATP8B4Q8TF62 1192 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CUL5Q93034 780 aa2.54□□□□□ -2
VPS54-202ENST00000354504 C16orf45Q96MC5 204 aaPredicted RBP2.54□□□□□ -2
VPS54-202ENST00000354504 SH3GL2Q99962 352 aa2.54□□□□□ -2
VPS54-202ENST00000354504 SH2D4AQ9H788 454 aa2.54□□□□□ -2
VPS54-202ENST00000354504 PSTPIP2Q9H939 334 aa2.54□□□□□ -2
VPS54-202ENST00000354504 SPC25Q9HBM1 224 aa2.54□□□□□ -2
VPS54-202ENST00000354504 TUFT1Q9NNX1 390 aa2.54□□□□□ -2
VPS54-202ENST00000354504 SLC39A2Q9NP94 309 aa2.54□□□□□ -2
VPS54-202ENST00000354504 JADE2Q9NQC1 790 aa2.54□□□□□ -2
VPS54-202ENST00000354504 PICK1Q9NRD5 415 aa2.54□□□□□ -2
VPS54-202ENST00000354504 MAP3K20Q9NYL2 800 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 STX8Q9UNK0 236 aa2.54□□□□□ -2
VPS54-202ENST00000354504 PCDHA1Q9Y5I3 950 aa2.54□□□□□ -2
VPS54-202ENST00000354504 GSTTP1A0A1W2PQM5 241 aa2.53□□□□□ -2
VPS54-202ENST00000354504 GTPBP10A4D1E9 387 aaKnown RBP2.53□□□□□ -2
VPS54-202ENST00000354504 TCP10L2B9ZVM9 353 aa2.53□□□□□ -2
VPS54-202ENST00000354504 ANKRD63C9JTQ0 380 aa2.53□□□□□ -2
VPS54-202ENST00000354504 KPNA6O60684 536 aa2.53□□□□□ -2
VPS54-202ENST00000354504 CRTAMO95727 393 aa2.53□□□□□ -2
VPS54-202ENST00000354504 C1QAP02745 245 aa2.53□□□□□ -2
VPS54-202ENST00000354504 THBS2P35442 1172 aa2.53□□□□□ -2
VPS54-202ENST00000354504 RARRES1P49788 294 aa2.53□□□□□ -2
VPS54-202ENST00000354504 GFRA1P56159 465 aa2.53□□□□□ -2
VPS54-202ENST00000354504 NKX3-2P78367 333 aa2.53□□□□□ -2
VPS54-202ENST00000354504 LRRC63Q05C16 580 aa2.53□□□□□ -2
VPS54-202ENST00000354504 ITIH3Q06033 890 aa2.53□□□□□ -2
VPS54-202ENST00000354504 PPP3CAQ08209 521 aa2.53□□□□□ -2
VPS54-202ENST00000354504 STRN3Q13033 797 aa2.53□□□□□ -2
VPS54-202ENST00000354504 KIF22Q14807 665 aa2.53□□□□□ -2
VPS54-202ENST00000354504 TRADDQ15628 312 aa2.53□□□□□ -2
VPS54-202ENST00000354504 ZC2HC1CQ53FD0 456 aaPredicted RBP2.53□□□□□ -2
VPS54-202ENST00000354504 MARCH8Q5T0T0 291 aa2.53□□□□□ -2
VPS54-202ENST00000354504 WDR93Q6P2C0 686 aa2.53□□□□□ -2
VPS54-202ENST00000354504 SYNE3Q6ZMZ3 975 aa2.53□□□□□ -2
VPS54-202ENST00000354504 KRT26Q7Z3Y9 468 aa2.53□□□□□ -2
VPS54-202ENST00000354504 BNIPLQ7Z465 357 aa2.53□□□□□ -2
VPS54-202ENST00000354504 HOMER1Q86YM7 354 aa2.53□□□□□ -2
VPS54-202ENST00000354504 C7orf31Q8N865 590 aa2.53□□□□□ -2
VPS54-202ENST00000354504 FAM133AQ8N9E0 248 aa2.53□□□□□ -2
VPS54-202ENST00000354504 DTWD2Q8NBA8 298 aa2.53□□□□□ -2
VPS54-202ENST00000354504 AFAP1L1Q8TED9 768 aa2.53□□□□□ -2
VPS54-202ENST00000354504 SMCR8Q8TEV9 937 aaPredicted RBP2.53□□□□□ -2
VPS54-202ENST00000354504 AENQ8WTP8 325 aaKnown RBP2.53□□□□□ -2
VPS54-202ENST00000354504 HDAC7Q8WUI4 952 aa2.53□□□□□ -2
VPS54-202ENST00000354504 NINJ1Q92982 152 aa2.53□□□□□ -2
VPS54-202ENST00000354504 ZKSCAN4Q969J2 545 aaPredicted RBP2.53□□□□□ -2
VPS54-202ENST00000354504 CCDC74BQ96LY2 380 aa2.53□□□□□ -2
VPS54-202ENST00000354504 MFSD14AQ96MC6 490 aa2.53□□□□□ -2
VPS54-202ENST00000354504 FAM20AQ96MK3 541 aa2.53□□□□□ -2
VPS54-202ENST00000354504 TAAR1Q96RJ0 339 aa2.53□□□□□ -2
VPS54-202ENST00000354504 PCDHB18PQ96TA0 734 aa2.53□□□□□ -2
VPS54-202ENST00000354504 PLIN2Q99541 437 aa2.53□□□□□ -2
VPS54-202ENST00000354504 TUBGCP2Q9BSJ2 902 aa2.53□□□□□ -2
VPS54-202ENST00000354504 TRIM5Q9C035 493 aa2.53□□□□□ -2
VPS54-202ENST00000354504 CDIP1Q9H305 208 aa2.53□□□□□ -2
VPS54-202ENST00000354504 KCNH7Q9NS40 1196 aa2.53□□□□□ -2
VPS54-202ENST00000354504 TAB2Q9NYJ8 693 aa2.53□□□□□ -2
VPS54-202ENST00000354504 EURLQ9NYK6 297 aa2.53□□□□□ -2
VPS54-202ENST00000354504 HDAC6Q9UBN7 1215 aa2.53□□□□□ -2
VPS54-202ENST00000354504 FEM1BQ9UK73 627 aa2.53□□□□□ -2
VPS54-202ENST00000354504 EMC9Q9Y3B6 208 aa2.53□□□□□ -2
VPS54-202ENST00000354504 NR2E1Q9Y466 385 aa2.53□□□□□ -2
VPS54-202ENST00000354504 KIF3AQ9Y496 699 aa2.53□□□□□ -2
VPS54-202ENST00000354504 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP2.53□□□□□ -25e-6■■■□□ 18.6
VPS54-202ENST00000354504 ZHX2Q9Y6X8 837 aa2.53□□□□□ -2
VPS54-202ENST00000354504 UBE4BO95155 1302 aa2.53□□□□□ -2
VPS54-202ENST00000354504 MYPNQ86TC9 1320 aa2.53□□□□□ -2
VPS54-202ENST00000354504 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP2.53□□□□□ -2
VPS54-202ENST00000354504 GRID2IPA4D2P6 1211 aa2.53□□□□□ -2
VPS54-202ENST00000354504 C3orf70A6NLC5 250 aaPredicted RBP2.53□□□□□ -2
VPS54-202ENST00000354504 DDX3XO00571 662 aaKnown RBP eCLIP2.53□□□□□ -2
VPS54-202ENST00000354504 WDR46O15213 610 aaKnown RBP2.53□□□□□ -2
VPS54-202ENST00000354504 PPIP5K2O43314 1243 aa2.53□□□□□ -2
VPS54-202ENST00000354504 DNAJC6O75061 913 aa2.53□□□□□ -2
VPS54-202ENST00000354504 MTA2O94776 668 aa2.53□□□□□ -2
VPS54-202ENST00000354504 TPM3P06753 285 aa2.53□□□□□ -2
VPS54-202ENST00000354504 THBDP07204 575 aa2.53□□□□□ -2
VPS54-202ENST00000354504 ACTN1P12814 892 aa2.53□□□□□ -2
VPS54-202ENST00000354504 PRLRP16471 622 aa2.53□□□□□ -2
VPS54-202ENST00000354504 SLC9A1P19634 815 aa2.53□□□□□ -2
VPS54-202ENST00000354504 ARL2P36404 184 aa2.53□□□□□ -2
VPS54-202ENST00000354504 EPS15P42566 896 aa2.53□□□□□ -2
VPS54-202ENST00000354504 PEX5P50542 639 aa2.53□□□□□ -2
VPS54-202ENST00000354504 STAT2P52630 851 aa2.53□□□□□ -2
VPS54-202ENST00000354504 OAZ1P54368 228 aa2.53□□□□□ -2
VPS54-202ENST00000354504 BACE1P56817 501 aa2.53□□□□□ -2
VPS54-202ENST00000354504 KCTD19Q17RG1 926 aaPredicted RBP2.53□□□□□ -2
VPS54-202ENST00000354504 GTF2IRD2BQ6EKJ0 949 aa2.53□□□□□ -2
VPS54-202ENST00000354504 TAPT1Q6NXT6 567 aa2.53□□□□□ -2
VPS54-202ENST00000354504 GJB7Q6PEY0 223 aa2.53□□□□□ -2
VPS54-202ENST00000354504 MIGA2Q7L4E1 593 aa2.53□□□□□ -2
VPS54-202ENST00000354504 GTF2IRD2Q86UP8 949 aa2.53□□□□□ -2
VPS54-202ENST00000354504 ZNF444Q8N0Y2 327 aaPredicted RBP2.53□□□□□ -2
VPS54-202ENST00000354504 SPICE1Q8N0Z3 855 aa2.53□□□□□ -2
VPS54-202ENST00000354504 SAMD3Q8N6K7 520 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms