RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 GOLGA8TH3BQL2 631 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 TLR2O60603 784 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 CCDC15Q0P6D6 951 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 TBL3Q12788 808 aaKnown RBP9.05□□□□□ -0.96
RTN3-202ENST00000339997 PDAP1Q13442 181 aaKnown RBP9.05□□□□□ -0.96
RTN3-202ENST00000339997 TRIM16LQ309B1 348 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 CES3Q6UWW8 571 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 SCUBE1Q8IWY4 988 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 PBXIP1Q96AQ6 731 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 SIKE1Q9BRV8 207 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 TMEM120AQ9BXJ8 343 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 AGPAT3Q9NRZ7 376 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 TMEM161AQ9NX61 479 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 HERC5Q9UII4 1024 aaKnown RBP9.05□□□□□ -0.96
RTN3-202ENST00000339997 MCM8Q9UJA3 840 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 DNAJC16Q9Y2G8 782 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 DAGLAQ9Y4D2 1042 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 DYTNA2CJ06 578 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 MAGEA13PA6NCF6 341 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 ASAP2O43150 1006 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 KRT75O95678 551 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 CLPTM1O96005 669 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 ZSCAN5DPP0CG00 497 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 CDKAL1Q5VV42 579 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 CREG2Q8IUH2 290 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 CDKL3Q8IVW4 592 aaPredicted RBP9.05□□□□□ -0.96
RTN3-202ENST00000339997 SPATA33Q96N06 139 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 AP5M1Q9H0R1 490 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 SP110Q9HB58 689 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 DDX56Q9NY93 547 aaKnown RBP9.05□□□□□ -0.96
RTN3-202ENST00000339997 PCDHB2Q9Y5E7 798 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 ATP7BP35670 1465 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 EPHB6O15197 1021 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 SUPT7LO94864 414 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 PYGMP11217 842 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 HDAC4P56524 1084 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 TPI1P60174 286 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 C16orf72Q14CZ0 275 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 OTUD3Q5T2D3 398 aaPredicted RBP9.05□□□□□ -0.96
RTN3-202ENST00000339997 KHDRBS2Q5VWX1 349 aaKnown RBP9.05□□□□□ -0.96
RTN3-202ENST00000339997 CYP2R1Q6VVX0 501 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 KBTBD2Q8IY47 623 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 DEFB107AQ8IZN7 70 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 TAS1R2Q8TE23 839 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 PYDC1Q8WXC3 89 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 MRPL4Q9BYD3 311 aaKnown RBP9.05□□□□□ -0.96
RTN3-202ENST00000339997 KIAA1586Q9HCI6 787 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 ANKARQ7Z5J8 1434 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 KNDC1Q76NI1 1749 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 NCOA3Q9Y6Q9 1424 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 WTIPA6NIX2 430 aaPredicted RBP9.05□□□□□ -0.96
RTN3-202ENST00000339997 SAC3D1A6NKF1 404 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 FOXO6A8MYZ6 492 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 DLGAP3O95886 979 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 RARGP13631 454 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 ZNF23P17027 643 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 IFNA8P32881 189 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 DMPKQ09013 629 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 SURF1Q15526 300 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 KIAA0895Q8NCT3 520 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 L3MBTL3Q96JM7 780 aaPredicted RBP9.05□□□□□ -0.96
RTN3-202ENST00000339997 ZFYVE19Q96K21 471 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 FAM84AQ96KN4 292 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 PAFAH2Q99487 392 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 ROPN1BQ9BZX4 212 aaPredicted RBP9.05□□□□□ -0.96
RTN3-202ENST00000339997 ROPN1Q9HAT0 212 aaPredicted RBP9.05□□□□□ -0.96
RTN3-202ENST00000339997 RNF19AQ9NV58 838 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 LMCD1Q9NZU5 365 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 PRR12Q9ULL5 1215 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 LRRC7Q96NW7 1537 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 DLG5Q8TDM6 1919 aa9.05□□□□□ -0.96
RTN3-202ENST00000339997 ECE2O60344 883 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 ZMPSTE24O75844 475 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 PGM3O95394 542 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 SLC1A1P43005 524 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 RPL21P46778 160 aaKnown RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 FSTL1Q12841 308 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 EDRF1Q3B7T1 1238 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 TEDDM1Q5T9Z0 273 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 PCNX4Q63HM2 1172 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 PPP1R2P3Q6NXS1 205 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 TRAF7Q6Q0C0 670 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 DENND5BQ6ZUT9 1274 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 CCDC103Q8IW40 242 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 ASPSCR1Q9BZE9 553 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 DCLRE1BQ9H816 532 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 INTS13Q9NVM9 706 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 HECW2Q9P2P5 1572 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 USP42Q9H9J4 1324 aaKnown RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 FAM95CA0A1B0GW59 222 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 ENDOD1O94919 500 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 SULT1E1P49888 294 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 STAT5BP51692 787 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 RC3H1Q5TC82 1133 aaKnown RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 ADGRA1Q86SQ6 560 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 SCFD1Q8WVM8 642 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 ASIC4Q96FT7 647 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 SERPINB12Q96P63 405 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 SEMA6AQ9H2E6 1030 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms