RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 Q3ZCU0 254 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 RHOUQ7L0Q8 258 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 GATAD2AQ86YP4 633 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF34Q8IZ26 560 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 SIX6OS1Q8N1H7 587 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ESR2Q92731 530 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TXNDC15Q96J42 360 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 DEPDC7Q96QD5 511 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 NEURL2Q9BR09 285 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 GLS2Q9UI32 602 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 PNMA3Q9UL41 463 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ESYT3A0FGR9 886 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 IDH1O75874 414 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ALAS1P13196 640 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 PCSK7Q16549 785 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 MAPK6Q16659 721 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 GRAMD1BQ3KR37 738 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TLK2Q86UE8 772 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TPH2Q8IWU9 490 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF578Q96N58 590 aaPredicted RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 MOGAT1Q96PD6 335 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 QKIQ96PU8 341 aaKnown RBP eCLIP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 BBS4Q96RK4 519 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF347Q96SE7 839 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 BCL7BQ9BQE9 202 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 IER2Q9BTL4 223 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF717Q9BY31 904 aaPredicted RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ZC3H12CQ9C0D7 883 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 GRIP2Q9C0E4 1043 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 RAVER2Q9HCJ3 691 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 LGALS13Q9UHV8 139 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF536O15090 1300 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ADGRB3O60242 1522 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 GPATCH8Q9UKJ3 1502 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 C1orf232A0A0U1RR37 186 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TTC26A0AVF1 554 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 SAGE2PA6NJ88 616 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 I3L4J1 428 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 RSL1D1O76021 490 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 IL1BP01584 269 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 CYP1A1P04798 512 aaPredicted RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TGFB3P10600 412 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ADCY8P40145 1251 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 SMARCB1Q12824 385 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF600Q6ZNG1 722 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TRMT44Q8IYL2 757 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 SLC17A8Q8NDX2 589 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 OR2W6PQ8NHA6 318 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 PI4K2BQ8TCG2 481 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TGFBRAP1Q8WUH2 860 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 CNBD2Q96M20 576 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 NOC4LQ9BVI4 516 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 CAB39LQ9H9S4 337 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 GPHNQ9NQX3 736 aaPredicted RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 CTNND2Q9UQB3 1225 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 CLIC4Q9Y696 253 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 FLT1P17948 1338 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 PCDH11XQ9BZA7 1347 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 EDF1O60869 148 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TBX10O75333 385 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TM7SF2O76062 418 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TRAPPC2P0DI81 140 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TRAPPC2BP0DI82 140 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 PTPREP23469 700 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 NAMPTP43490 491 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 RAB14P61106 215 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 CFAP70Q5T0N1 1121 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TTBK2Q6IQ55 1244 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF767PQ75MW2 155 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 LILRB2Q8N423 598 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 BLOC1S5Q8TDH9 187 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 VPS33AQ96AX1 596 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 CEP95Q96GE4 821 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 KIAA1683Q9H0B3 1180 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 SENP3Q9H4L4 574 aaPredicted RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 BABAM1Q9NWV8 329 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 SFMBT1Q9UHJ3 866 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 IVNS1ABPQ9Y6Y0 642 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TDRD9Q8NDG6 1382 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 NBPF26B4DH59 902 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 CLDN25C9JDP6 229 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 STX16-NPEPL1H3BU86 382 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 CALUO43852 315 aaPredicted RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 KRT15P19012 456 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 MAP4P27816 1152 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TYK2P29597 1187 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 HOXD13P35453 343 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TALDO1P37837 337 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ETFBP38117 255 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 CABP4P57796 275 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 RPP38P78345 283 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 POU6F1Q14863 301 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 OASLQ15646 514 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TYSND1Q2T9J0 566 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 KIAA1755Q5JYT7 1200 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ZCCHC8Q6NZY4 707 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 RALYLQ86SE5 291 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 RTKN2Q8IZC4 609 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 KCT2Q8NC54 265 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 HCAR2Q8TDS4 363 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms