RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 FAM96AQ9H5X1 160 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 PCDHB5Q9Y5E4 795 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 WNT7AO00755 349 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 ZBTB39O15060 712 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 DYNLT1P63172 113 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 RETSATQ6NUM9 610 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 PID1Q7Z2X4 250 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 SENP8Q96LD8 212 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 PCDHB12Q9Y5F1 795 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 OR6C75A6NL08 312 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 IL9RQ01113 521 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 ITKQ08881 620 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 SHROOM1Q2M3G4 852 aaPredicted RBP7.2□□□□□ -1.26
SF3B1-201ENST00000335508 RNF187Q5TA31 235 aaPredicted RBP7.2□□□□□ -1.26
SF3B1-201ENST00000335508 CYP4A22Q5TCH4 519 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 LRRC49Q8IUZ0 686 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 REXO1L1PQ8IX06 675 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 ADGRF2Q8IZF7 708 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 TRAIPQ9BWF2 469 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 HEMGNQ9BXL5 484 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 CATSPERBQ9H7T0 1116 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 ASXL3Q9C0F0 2248 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 MT-ND3P03897 115 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 ERBB2P04626 1255 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 EPHB2P29323 1055 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 CASP5P51878 434 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 AMPD2Q01433 879 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 KCNA1Q09470 495 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 GRIK3Q13003 919 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 BYSLQ13895 437 aaKnown RBP7.2□□□□□ -1.26
SF3B1-201ENST00000335508 GRB14Q14449 540 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 ZNF235Q14590 738 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 PPP2R5DQ14738 602 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 TMCO4Q5TGY1 634 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 NUGGCQ68CJ6 796 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 RWDD4Q6NW29 188 aaKnown RBP7.2□□□□□ -1.26
SF3B1-201ENST00000335508 EP400NLQ6ZTU2 488 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 TRMT10CQ7L0Y3 403 aaKnown RBP7.2□□□□□ -1.26
SF3B1-201ENST00000335508 ACOT1Q86TX2 421 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 CHSY1Q86X52 802 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 RAB3IL1Q8TBN0 382 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 FNIP1Q8TF40 1166 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 HNRNPLLQ8WVV9 542 aaKnown RBP7.2□□□□□ -1.26
SF3B1-201ENST00000335508 CCT6BQ92526 530 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 PI4K2AQ9BTU6 479 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 INTS9Q9NV88 658 aaKnown RBP7.2□□□□□ -1.26
SF3B1-201ENST00000335508 KLHL14Q9P2G3 628 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 PCDHB7Q9Y5E2 793 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 SF3B1O75533 1304 aaKnown RBP eCLIP7.2□□□□□ -1.264e-7■■■■■ 53
SF3B1-201ENST00000335508 IQANK1A0A1B0GTG1 560 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 LGR5O75473 907 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 GLI1P08151 1106 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 PAMP19021 973 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 SLC11A2P49281 568 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 BEX3Q00994 111 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 MTHFD1LQ6UB35 978 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 ZNF571Q7Z3V5 609 aaPredicted RBP7.2□□□□□ -1.26
SF3B1-201ENST00000335508 SAPCD2Q86UD0 394 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 TPCN2Q8NHX9 752 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 PXYLP1Q8TE99 480 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 GDAP1L1Q96MZ0 367 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 ERP44Q9BS26 406 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 FAM105AQ9NUU6 356 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 CDY2AQ9Y6F7 541 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 SQORQ9Y6N5 450 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 SCN11AQ9UI33 1791 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 DDX3XO00571 662 aaKnown RBP eCLIP7.19□□□□□ -1.263e-10■■■■■ 34.8
SF3B1-201ENST00000335508 CKMP06732 381 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 ASGR1P07306 291 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 NNTQ13423 1086 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 STAT4Q14765 748 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 CICQ96RK0 1608 aaPredicted RBP7.19□□□□□ -1.26
SF3B1-201ENST00000335508 SLC10A3P09131 477 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 LLGL1Q15334 1064 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 NBPF20Q3BBV1 942 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 DCAF6Q58WW2 860 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 GJC2Q5T442 439 aaPredicted RBP7.19□□□□□ -1.26
SF3B1-201ENST00000335508 KSR1Q8IVT5 923 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 ALKBH8Q96BT7 664 aaKnown RBP7.19□□□□□ -1.26
SF3B1-201ENST00000335508 YME1L1Q96TA2 773 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 VAT1Q99536 393 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 TXNRD2Q9NNW7 524 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 EFR3BQ9Y2G0 817 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 ATP11BQ9Y2G3 1177 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 GOLGA8QA0A0J9YX86 632 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 A0A1B0GUA9 196 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 TMEM150BA6NC51 233 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 GOLGA8OA6NCC3 632 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 GOLGA8NF8WBI6 632 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 C22orf31O95567 290 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 ATN1P54259 1190 aaPredicted RBP7.19□□□□□ -1.26
SF3B1-201ENST00000335508 RRP1BQ14684 758 aaKnown RBP7.19□□□□□ -1.26
SF3B1-201ENST00000335508 PTGISQ16647 500 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 GEN1Q17RS7 908 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 VSTM1Q6UX27 236 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 TSHZ1Q6ZSZ6 1077 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 POLNQ7Z5Q5 900 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 MCOLN2Q8IZK6 566 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 CEP120Q8N960 986 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 CRYGNQ8WXF5 182 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms