RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 MTHFRP42898 656 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 MXI1P50539 228 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 NDST1P52848 882 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 CYP27A1Q02318 531 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 STIM1Q13586 685 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 CCDC40Q4G0X9 1142 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 PABPC1LQ4VXU2 614 aaKnown RBP12.88□□□□□ -0.35
SCFD1-201ENST00000311943 TPGS2Q68CL5 300 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 CAVIN1Q6NZI2 390 aaKnown RBP12.88□□□□□ -0.35
SCFD1-201ENST00000311943 GJB7Q6PEY0 223 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 PARM1Q6UWI2 310 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 TMC8Q8IU68 726 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 KCNK16Q96T55 309 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 ACBD6Q9BR61 282 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 ZNF518BQ9C0D4 1074 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 SMG9Q9H0W8 520 aaKnown RBP12.88□□□□□ -0.35
SCFD1-201ENST00000311943 TMEM8AQ9HCN3 771 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 FAM49BQ9NUQ9 324 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 DSEQ9UL01 958 aa12.88□□□□□ -0.35
SCFD1-201ENST00000311943 MAPK13O15264 365 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 HAPLN1P10915 354 aaPredicted RBP12.87□□□□□ -0.35
SCFD1-201ENST00000311943 CCDC130P13994 396 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 NLRP12P59046 1061 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 USP46P62068 366 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 CYP4F8P98187 520 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 PRSS36Q5K4E3 855 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 KRT39Q6A163 491 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 FAM171BQ6P995 826 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 GAREM2Q75VX8 874 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 DPH6Q7L8W6 267 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 DNAJB7Q7Z6W7 309 aaPredicted RBP12.87□□□□□ -0.35
SCFD1-201ENST00000311943 FILIP1Q7Z7B0 1213 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 SCN4BQ8IWT1 228 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 NPAS3Q8IXF0 933 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 TRIML1Q8N9V2 468 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 SYAP1Q96A49 352 aaPredicted RBP12.87□□□□□ -0.35
SCFD1-201ENST00000311943 CRACR2AQ9BSW2 395 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 MKNK1Q9BUB5 465 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 B3GNT5Q9BYG0 378 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 PLA2G2FQ9BZM2 168 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 RAB20Q9NX57 234 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 MAGED2Q9UNF1 606 aaPredicted RBP12.87□□□□□ -0.35
SCFD1-201ENST00000311943 USP34Q70CQ2 3546 aa12.87□□□□□ -0.35
SCFD1-201ENST00000311943 FAM170AA1A519 330 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 FSD2A1L4K1 749 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 PAPLNO95428 1278 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 PDGFBP01127 241 aaPredicted RBP12.86□□□□□ -0.35
SCFD1-201ENST00000311943 PTPN1P18031 435 aaKnown RBP12.86□□□□□ -0.35
SCFD1-201ENST00000311943 PLD1Q13393 1074 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 TEAD2Q15562 447 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 PTPN21Q16825 1174 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 SGSM1Q2NKQ1 1148 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 UVSSAQ2YD98 709 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 RBM43Q6ZSC3 357 aaKnown RBP12.86□□□□□ -0.35
SCFD1-201ENST00000311943 TMEM150AQ86TG1 271 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 ARHGEF19Q8IW93 802 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 TRIM59Q8IWR1 403 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 LMO3Q8TAP4 145 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 HDAC7Q8WUI4 952 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 ELOVL4Q9GZR5 314 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 SNX25Q9H3E2 840 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 PRKAG3Q9UGI9 489 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 RAPGEFL1Q9UHV5 662 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 RWDD2AQ9UIY3 292 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 SLC16A3O15427 465 aaKnown RBP12.86□□□□□ -0.35
SCFD1-201ENST00000311943 HNRNPA1P09651 372 aaKnown RBP eCLIP12.86□□□□□ -0.35
SCFD1-201ENST00000311943 LAMP2P13473 410 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 HMGA1P17096 107 aaKnown RBP12.86□□□□□ -0.35
SCFD1-201ENST00000311943 FMO5P49326 533 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 MCCD1P59942 119 aaPredicted RBP12.86□□□□□ -0.35
SCFD1-201ENST00000311943 MYL7Q01449 175 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 KCNH2Q12809 1159 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 RRAGAQ7L523 313 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 TMEM86AQ8N2M4 240 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 TDRD5Q8NAT2 981 aaKnown RBP12.86□□□□□ -0.35
SCFD1-201ENST00000311943 SHKBP1Q8TBC3 707 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 CNOT6LQ96LI5 555 aaKnown RBP12.86□□□□□ -0.35
SCFD1-201ENST00000311943 VRTNQ9H8Y1 702 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 KCNK12Q9HB15 430 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 IL21Q9HBE4 155 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 AJAP1Q9UKB5 411 aaPredicted RBP12.86□□□□□ -0.35
SCFD1-201ENST00000311943 FAM50BQ9Y247 325 aa12.86□□□□□ -0.35
SCFD1-201ENST00000311943 MRPS23Q9Y3D9 190 aaKnown RBP12.86□□□□□ -0.35
SCFD1-201ENST00000311943 TACC1O75410 805 aa12.85□□□□□ -0.35
SCFD1-201ENST00000311943 STAU1O95793 577 aaKnown RBP12.85□□□□□ -0.35
SCFD1-201ENST00000311943 PTPN2P17706 415 aa12.85□□□□□ -0.35
SCFD1-201ENST00000311943 HOXA9P31269 272 aa12.85□□□□□ -0.35
SCFD1-201ENST00000311943 ATICP31939 592 aa12.85□□□□□ -0.35
SCFD1-201ENST00000311943 VIPR2P41587 438 aa12.85□□□□□ -0.35
SCFD1-201ENST00000311943 LHX1P48742 406 aa12.85□□□□□ -0.35
SCFD1-201ENST00000311943 PGFP49763 221 aa12.85□□□□□ -0.35
SCFD1-201ENST00000311943 TSPY1Q01534 308 aa12.85□□□□□ -0.35
SCFD1-201ENST00000311943 IFRD2Q12894 506 aaPredicted RBP12.85□□□□□ -0.35
SCFD1-201ENST00000311943 FBXL13Q8NEE6 735 aa12.85□□□□□ -0.35
SCFD1-201ENST00000311943 FAM200AQ8TCP9 573 aa12.85□□□□□ -0.35
SCFD1-201ENST00000311943 JAKMIP2Q96AA8 810 aa12.85□□□□□ -0.35
SCFD1-201ENST00000311943 RSPRY1Q96DX4 576 aa12.85□□□□□ -0.35
SCFD1-201ENST00000311943 ZNF512Q96ME7 567 aaPredicted RBP12.85□□□□□ -0.35
SCFD1-201ENST00000311943 CEP63Q96MT8 703 aa12.85□□□□□ -0.35
SCFD1-201ENST00000311943 NECTIN4Q96NY8 510 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms