RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 RGS7P49802 495 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 AQP5P55064 265 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 CUL2Q13617 745 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 TTLL4Q14679 1199 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 EMC2Q15006 297 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 CNDP1Q96KN2 507 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 SIK2Q9H0K1 926 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 C17orf75Q9HAS0 396 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 TBX20Q9UMR3 447 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 HNRNPCL2B2RXH8 293 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 ZC3H11AO75152 810 aaKnown RBP eCLIP13.38□□□□□ -0.27
COL3A1-201ENST00000304636 CCDC159P0C7I6 412 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 CCNJLQ8IV13 435 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 DUSP9Q99956 384 aaKnown RBP13.38□□□□□ -0.27
COL3A1-201ENST00000304636 ZNF212Q9UDV6 495 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 SKAP2O75563 359 aaPredicted RBP13.38□□□□□ -0.27
COL3A1-201ENST00000304636 MYO1DO94832 1006 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 BOLA3Q53S33 107 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 SNX30Q5VWJ9 437 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 TMPRSS6Q8IU80 811 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 STK32AQ8WU08 396 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 EFCAB1Q9HAE3 211 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 METTL5Q9NRN9 209 aaKnown RBP13.38□□□□□ -0.27
COL3A1-201ENST00000304636 NRXN1Q9ULB1 1477 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 FDFT1P37268 417 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 IFNEQ86WN2 208 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 MREGQ8N565 214 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 TERB1Q8NA31 727 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 CALML6Q8TD86 181 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 PPP2R3CQ969Q6 453 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 EHD4Q9H223 541 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 CAMTA2O94983 1202 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 IL18RAPO95256 599 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 IREB2P48200 963 aaKnown RBP13.38□□□□□ -0.27
COL3A1-201ENST00000304636 DEFA1P59665 94 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 DEFA3P59666 94 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 SLC26A11Q86WA9 606 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 PDCD6IPQ8WUM4 868 aaKnown RBP13.38□□□□□ -0.27
COL3A1-201ENST00000304636 SLIT1O75093 1534 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 KDM6AO15550 1401 aaPredicted RBP13.37□□□□□ -0.27
COL3A1-201ENST00000304636 EEF2KO00418 725 aaKnown RBP13.37□□□□□ -0.27
COL3A1-201ENST00000304636 AKAP3O75969 853 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 PROSCO94903 275 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 SERPINB1P30740 379 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 RFC5P40937 340 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 RPL21P46778 160 aaKnown RBP13.37□□□□□ -0.27
COL3A1-201ENST00000304636 PLA2G4FQ68DD2 849 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 TWF2Q6IBS0 349 aaKnown RBP13.37□□□□□ -0.27
COL3A1-201ENST00000304636 IRGCQ6NXR0 463 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 CRELD2Q6UXH1 353 aaPredicted RBP13.37□□□□□ -0.27
COL3A1-201ENST00000304636 BNC2Q6ZN30 1099 aaPredicted RBP13.37□□□□□ -0.27
COL3A1-201ENST00000304636 ZNF662Q6ZS27 426 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 SH3RF1Q7Z6J0 888 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 PARD3BQ8TEW8 1205 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 ZNF668Q96K58 619 aaPredicted RBP13.37□□□□□ -0.27
COL3A1-201ENST00000304636 SPATA33Q96N06 139 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 SHCBP1LQ9BZQ2 653 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 FAM205AQ6ZU69 1335 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 CHD1O14646 1710 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 TLR2O60603 784 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 CNTFP26441 200 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 ALDH5A1P51649 535 aaPredicted RBP13.37□□□□□ -0.27
COL3A1-201ENST00000304636 NUP107P57740 925 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 PPP4CP60510 307 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 IFI35P80217 286 aaPredicted RBP13.37□□□□□ -0.27
COL3A1-201ENST00000304636 ITGB3BPQ13352 177 aaPredicted RBP13.37□□□□□ -0.27
COL3A1-201ENST00000304636 DPY19L2Q6NUT2 758 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 TBC1D16Q8TBP0 767 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 TATDN2Q93075 761 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 NTSR2O95665 410 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 ALBP02768 609 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 TRIM16LQ309B1 348 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 ACBD5Q5T8D3 534 aaPredicted RBP13.37□□□□□ -0.27
COL3A1-201ENST00000304636 SCN4BQ8IWT1 228 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 ZNF786Q8N393 782 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 MAML3Q96JK9 1138 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 LRFN2Q9ULH4 789 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 A0A087X0B3 334 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 GPR75-ASB3A0A0A6YYF3 556 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 ZBTB39O15060 712 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 KRT75O95678 551 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 MMP10P09238 476 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 SPP2Q13103 211 aa13.37□□□□□ -0.27
COL3A1-201ENST00000304636 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.37□□□□□ -0.27
COL3A1-201ENST00000304636 E2F8A0AVK6 867 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 PSMA4P25789 261 aaKnown RBP13.36□□□□□ -0.27
COL3A1-201ENST00000304636 HMOX2P30519 316 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 MYBPC2Q14324 1141 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 CYP4A22Q5TCH4 519 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 KCNV1Q6PIU1 500 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 HHIPL2Q6UWX4 724 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 NT5DC3Q86UY8 548 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 TRIM54Q9BYV2 358 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 SAR1AQ9NR31 198 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 SCN3BQ9NY72 215 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 MTSS1O43312 755 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 BGNP21810 368 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 KCNK10P57789 538 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 TMEM132DQ14C87 1099 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 FAM182BQ5T319 152 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms