RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 NCANO14594 1321 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 FAM186AA6NE01 2351 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 EP300Q09472 2414 aaPredicted RBP10.47□□□□□ -0.73
VPS41-201ENST00000265745 GVINP1Q7Z2Y8 2422 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 MTCL1Q9Y4B5 1905 aaKnown RBP10.46□□□□□ -0.73
VPS41-201ENST00000265745 F5P12259 2224 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 GPR179Q6PRD1 2367 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 ZNF233A6NK53 670 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 CHADO15335 359 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 POLR2DO15514 142 aaKnown RBP10.46□□□□□ -0.73
VPS41-201ENST00000265745 TGFB1I1O43294 461 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 LAMTOR5O43504 91 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 LMNAP02545 664 aaKnown RBP10.46□□□□□ -0.73
VPS41-201ENST00000265745 WEE1P30291 646 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 MLLT6P55198 1093 aaPredicted RBP10.46□□□□□ -0.73
VPS41-201ENST00000265745 EHHADHQ08426 723 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 VEPH1Q14D04 833 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 NFE2Q16621 373 aaPredicted RBP10.46□□□□□ -0.73
VPS41-201ENST00000265745 ZNF528Q3MIS6 628 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 GPR158Q5T848 1215 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 ATL3Q6DD88 541 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 ZC3H14Q6PJT7 736 aaKnown RBP10.46□□□□□ -0.73
VPS41-201ENST00000265745 MAMSTRQ6ZN01 415 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 CBWD2Q8IUF1 395 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 TMEM86AQ8N2M4 240 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 ZNF507Q8TCN5 953 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 FAM200AQ8TCP9 573 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 KCNG4Q8TDN1 519 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 GIPC2Q8TF65 315 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 FAM3CQ92520 227 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 CCDC97Q96F63 343 aaPredicted RBP10.46□□□□□ -0.73
VPS41-201ENST00000265745 SLC46A2Q9BY10 475 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 MTMR12Q9C0I1 747 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 TASP1Q9H6P5 420 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 INTS13Q9NVM9 706 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 OBP2AQ9NY56 170 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 ABI2Q9NYB9 513 aaPredicted RBP10.46□□□□□ -0.73
VPS41-201ENST00000265745 PCDHA7Q9UN72 937 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 L1RE1Q9UN81 338 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 PCDHB5Q9Y5E4 795 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 PIAS3Q9Y6X2 628 aa10.46□□□□□ -0.73
VPS41-201ENST00000265745 NOTCH4Q99466 2003 aa10.46□□□□□ -0.74
VPS41-201ENST00000265745 C3orf80F5H4A9 247 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 GABRDO14764 452 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 EIF3DO15371 548 aaKnown RBP eCLIP10.45□□□□□ -0.74
VPS41-201ENST00000265745 HUS1O60921 280 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 F13A1P00488 732 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 KRT19P08727 400 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 HMGA1P17096 107 aaKnown RBP10.45□□□□□ -0.74
VPS41-201ENST00000265745 CDC25CP30307 473 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 LHX1P48742 406 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 ASIC1P78348 528 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 TSPY1Q01534 308 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 CSTF1Q05048 431 aaKnown RBP10.45□□□□□ -0.74
VPS41-201ENST00000265745 BFSP1Q12934 665 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 MTAPQ13126 283 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 PKP1Q13835 747 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 DUOXA2Q1HG44 320 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 SOWAHAQ2M3V2 549 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 FOXD4L6Q3SYB3 417 aaPredicted RBP10.45□□□□□ -0.74
VPS41-201ENST00000265745 ARHGAP15Q53QZ3 475 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 FAM26FQ5R3K3 315 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 FOXD4L3Q6VB84 417 aaPredicted RBP10.45□□□□□ -0.74
VPS41-201ENST00000265745 NUDT18Q6ZVK8 323 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 LIMS2Q7Z4I7 341 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 TMEM150AQ86TG1 271 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 HSCBQ8IWL3 235 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 YAF2Q8IY57 180 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 TOP6BLQ8N6T0 577 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 OR5B17Q8NGF7 314 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 SPATA18Q8TC71 538 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 NOC3LQ8WTT2 800 aaKnown RBP10.45□□□□□ -0.74
VPS41-201ENST00000265745 SCFD1Q8WVM8 642 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 NELL1Q92832 810 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 PKMYT1Q99640 499 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 MAGEF1Q9HAY2 307 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 KIAA1586Q9HCI6 787 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 DDX43Q9NXZ2 648 aaKnown RBP10.45□□□□□ -0.74
VPS41-201ENST00000265745 HSPBP1Q9NZL4 362 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 RCOR1Q9UKL0 485 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 NDRG2Q9UN36 371 aaKnown RBP10.45□□□□□ -0.74
VPS41-201ENST00000265745 SNX9Q9Y5X1 595 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 VPS13AQ96RL7 3174 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 CFAP54Q96N23 3096 aa10.45□□□□□ -0.74
VPS41-201ENST00000265745 PTPRJQ12913 1337 aa10.44□□□□□ -0.74
VPS41-201ENST00000265745 PVALEFA0A1B0GWK0 134 aa10.44□□□□□ -0.74
VPS41-201ENST00000265745 PRAMEF12O95522 483 aa10.44□□□□□ -0.74
VPS41-201ENST00000265745 F11P03951 625 aa10.44□□□□□ -0.74
VPS41-201ENST00000265745 HSP90AA1P07900 732 aaKnown RBP10.44□□□□□ -0.74
VPS41-201ENST00000265745 TMEM191BP0C7N4 346 aa10.44□□□□□ -0.74
VPS41-201ENST00000265745 CHRNB1P11230 501 aa10.44□□□□□ -0.74
VPS41-201ENST00000265745 ACAT1P24752 427 aaKnown RBP10.44□□□□□ -0.74
VPS41-201ENST00000265745 CCNE1P24864 410 aa10.44□□□□□ -0.74
VPS41-201ENST00000265745 CYP2F1P24903 491 aa10.44□□□□□ -0.74
VPS41-201ENST00000265745 CASP1P29466 404 aa10.44□□□□□ -0.74
VPS41-201ENST00000265745 ME1P48163 572 aa10.44□□□□□ -0.74
VPS41-201ENST00000265745 NLRP12P59046 1061 aa10.44□□□□□ -0.74
VPS41-201ENST00000265745 CYP4F8P98187 520 aa10.44□□□□□ -0.74
VPS41-201ENST00000265745 MYL7Q01449 175 aa10.44□□□□□ -0.74
VPS41-201ENST00000265745 SURF1Q15526 300 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms