RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 CRELD2Q6UXH1 353 aaPredicted RBP10.59□□□□□ -0.71
LIG3-201ENST00000262327 BZW1Q7L1Q6 419 aaKnown RBP10.59□□□□□ -0.71
LIG3-201ENST00000262327 KATNAL2Q8IYT4 538 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 ANKRD13AQ8IZ07 590 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 SAMD3Q8N6K7 520 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 GBP7Q8N8V2 638 aaPredicted RBP10.59□□□□□ -0.71
LIG3-201ENST00000262327 TTC8Q8TAM2 541 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 LRRC8CQ8TDW0 803 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 SPDL1Q96EA4 605 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 CFAP57Q96MR6 1250 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 SLITRK1Q96PX8 696 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 UBN1Q9NPG3 1134 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 RNF146Q9NTX7 359 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 EURLQ9NYK6 297 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 FBXO40Q9UH90 709 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.59□□□□□ -0.71
LIG3-201ENST00000262327 C2orf71A6NGG8 1288 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 PSTPIP1O43586 416 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 WEE2P0C1S8 567 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 MYBL1P10243 752 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 CCND1P24385 295 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 ADRA1DP25100 572 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 TNFSF9P41273 254 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 POLGP54098 1239 aaPredicted RBP10.58□□□□□ -0.72
LIG3-201ENST00000262327 SESN3P58005 492 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 ANKRD20A2Q5SQ80 823 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 C1QTNF12Q5T7M4 302 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 ANKRD20A1Q5TYW2 823 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 ANKRD20A3Q5VUR7 823 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 CDR2LQ86X02 465 aaPredicted RBP10.58□□□□□ -0.72
LIG3-201ENST00000262327 KLHL23Q8NBE8 558 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 ASAP3Q8TDY4 903 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 ZNF606Q8WXB4 792 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 CYP26B1Q9NR63 512 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 EXTL3O43909 919 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 ZBED4O75132 1171 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 ENTPD5O75356 428 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 RGS20O76081 388 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 ALADP13716 330 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 ATP2A2P16615 1042 aaKnown RBP10.58□□□□□ -0.72
LIG3-201ENST00000262327 PTP4A2Q12974 167 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 SPARCL1Q14515 664 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 MAPK6Q16659 721 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 RNF43Q68DV7 783 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 C15orf39Q6ZRI6 1047 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 TRIM74Q86UV6 250 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 TRIM73Q86UV7 250 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 LONP2Q86WA8 852 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 EXD1Q8NHP7 514 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 LRRN4Q8WUT4 740 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 FAM81BQ96LP2 452 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 SENP7Q9BQF6 1050 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 MSTO1Q9BUK6 570 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 KAT6AQ92794 2004 aa10.58□□□□□ -0.72
LIG3-201ENST00000262327 TCRBV7S3A2A0A539 114 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 TCEA3O75764 348 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 STBD1O95210 358 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 OSTNP61366 133 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 FSTL1Q12841 308 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 PRKG1Q13976 671 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 TAF1BQ53T94 588 aaPredicted RBP10.57□□□□□ -0.72
LIG3-201ENST00000262327 FNBP1LQ5T0N5 605 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 PLEKHA7Q6IQ23 1121 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 NIPA1Q7RTP0 329 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 OTOAQ7RTW8 1153 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 MTDHQ86UE4 582 aaKnown RBP10.57□□□□□ -0.72
LIG3-201ENST00000262327 ERO1BQ86YB8 467 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 SPDYE1Q8NFV5 336 aaPredicted RBP10.57□□□□□ -0.72
LIG3-201ENST00000262327 TCHPQ9BT92 498 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 MRPL47Q9HD33 250 aaKnown RBP10.57□□□□□ -0.72
LIG3-201ENST00000262327 DCAF8L1A6NGE4 600 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 CD48P09326 243 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 T-ENOLP0DO92 83 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 SFNP31947 248 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 HMGCS2P54868 508 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 GPX6P59796 221 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 ACTR2P61160 394 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 SNRPFP62306 86 aaKnown RBP10.57□□□□□ -0.72
LIG3-201ENST00000262327 TAF11Q15544 211 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 PLEKHG4Q58EX7 1191 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 SPOCD1Q6ZMY3 1216 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 ENOSF1Q7L5Y1 443 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 RHPN2Q8IUC4 686 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 EMC1Q8N766 993 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 DENND1AQ8TEH3 1009 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 TRIM11Q96F44 468 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 PRR11Q96HE9 360 aaPredicted RBP10.57□□□□□ -0.72
LIG3-201ENST00000262327 NTPCRQ9BSD7 190 aaKnown RBP10.57□□□□□ -0.72
LIG3-201ENST00000262327 TBC1D10AQ9BXI6 508 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 MAF1Q9H063 256 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 MAP3K20Q9NYL2 800 aaKnown RBP10.57□□□□□ -0.72
LIG3-201ENST00000262327 SLC17A7Q9P2U7 560 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 PCSK1NQ9UHG2 260 aa10.57□□□□□ -0.72
LIG3-201ENST00000262327 A0A0G2JND7 137 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 K7ERI5 159 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 PIK3R2O00459 728 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 CXCL11O14625 94 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 ITGBL1O95965 494 aaPredicted RBP10.56□□□□□ -0.72
LIG3-201ENST00000262327 POTEJP0CG39 1038 aa10.56□□□□□ -0.72
LIG3-201ENST00000262327 CCNB1P14635 433 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms