RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 IKBKGQ9Y6K9 419 aa15.08■□□□□ 0.01
SDC1-201ENST00000254351 CYP3A7-CYP3A51PA0A087WV96 503 aa15.08■□□□□ 0
SDC1-201ENST00000254351 LOC100653049A0A140TA62 436 aa15.08■□□□□ 0
SDC1-201ENST00000254351 DNALI1O14645 258 aaPredicted RBP15.08■□□□□ 0
SDC1-201ENST00000254351 MAGEB3O15480 346 aa15.08■□□□□ 0
SDC1-201ENST00000254351 ZMPSTE24O75844 475 aa15.08■□□□□ 0
SDC1-201ENST00000254351 KRT34O76011 436 aa15.08■□□□□ 0
SDC1-201ENST00000254351 FAM200BP0CF97 657 aa15.08■□□□□ 0
SDC1-201ENST00000254351 CYP3A7P24462 503 aa15.08■□□□□ 0
SDC1-201ENST00000254351 AQP4P55087 323 aa15.08■□□□□ 0
SDC1-201ENST00000254351 GDF10P55107 478 aa15.08■□□□□ 0
SDC1-201ENST00000254351 ASPHQ12797 758 aa15.08■□□□□ 0
SDC1-201ENST00000254351 SNRNP35Q16560 246 aaKnown RBP15.08■□□□□ 0
SDC1-201ENST00000254351 CCNG2Q16589 344 aa15.08■□□□□ 0
SDC1-201ENST00000254351 GRAMD1BQ3KR37 738 aa15.08■□□□□ 0
SDC1-201ENST00000254351 RALGPS1Q5JS13 557 aa15.08■□□□□ 0
SDC1-201ENST00000254351 ULK2Q8IYT8 1036 aa15.08■□□□□ 0
SDC1-201ENST00000254351 NT5C1BQ96P26 610 aa15.08■□□□□ 0
SDC1-201ENST00000254351 PRR5-ARHGAP8B1AHC4 643 aa15.08■□□□□ 0
SDC1-201ENST00000254351 ATP2A1O14983 1001 aa15.08■□□□□ 0
SDC1-201ENST00000254351 MAP3K6O95382 1288 aa15.08■□□□□ 0
SDC1-201ENST00000254351 RARBP10826 455 aa15.08■□□□□ 0
SDC1-201ENST00000254351 ARHGAP8P85298 464 aa15.08■□□□□ 0
SDC1-201ENST00000254351 TMPRSS15P98073 1019 aa15.08■□□□□ 0
SDC1-201ENST00000254351 NFX1Q12986 1120 aaKnown RBP15.08■□□□□ 0
SDC1-201ENST00000254351 MYBPC3Q14896 1274 aa15.08■□□□□ 0
SDC1-201ENST00000254351 SFT2D3Q587I9 215 aa15.08■□□□□ 0
SDC1-201ENST00000254351 TCHHL1Q5QJ38 904 aaPredicted RBP15.08■□□□□ 0
SDC1-201ENST00000254351 FAM102BQ5T8I3 360 aa15.08■□□□□ 0
SDC1-201ENST00000254351 C6orf163Q5TEZ5 329 aa15.08■□□□□ 0
SDC1-201ENST00000254351 ST13P4Q8IZP2 240 aaPredicted RBP15.08■□□□□ 0
SDC1-201ENST00000254351 TLE6Q9H808 572 aa15.08■□□□□ 0
SDC1-201ENST00000254351 ZNF212Q9UDV6 495 aa15.08■□□□□ 0
SDC1-201ENST00000254351 SMCHD1A6NHR9 2005 aa15.07■□□□□ 0
SDC1-201ENST00000254351 SPDYE16A6NNV3 312 aaPredicted RBP15.07■□□□□ 0
SDC1-201ENST00000254351 MAN1A1P33908 653 aa15.07■□□□□ 0
SDC1-201ENST00000254351 AQP5P55064 265 aa15.07■□□□□ 0
SDC1-201ENST00000254351 BPIFB4P59827 614 aa15.07■□□□□ 0
SDC1-201ENST00000254351 BMPR2Q13873 1038 aa15.07■□□□□ 0
SDC1-201ENST00000254351 CLEC16AQ2KHT3 1053 aa15.07■□□□□ 0
SDC1-201ENST00000254351 SMC1BQ8NDV3 1235 aa15.07■□□□□ 0
SDC1-201ENST00000254351 PIP4K2CQ8TBX8 421 aa15.07■□□□□ 0
SDC1-201ENST00000254351 ZWILCHQ9H900 591 aa15.07■□□□□ 0
SDC1-201ENST00000254351 IVNS1ABPQ9Y6Y0 642 aa15.07■□□□□ 0
SDC1-201ENST00000254351 CLUHO75153 1309 aa15.07■□□□□ 0
SDC1-201ENST00000254351 UMODL1Q5DID0 1318 aa15.07■□□□□ 0
SDC1-201ENST00000254351 E2F8A0AVK6 867 aa15.07■□□□□ 0
SDC1-201ENST00000254351 F8VP50 259 aa15.07■□□□□ 0
SDC1-201ENST00000254351 DLDP09622 509 aaKnown RBP15.07■□□□□ 0
SDC1-201ENST00000254351 PEX2P28328 305 aa15.07■□□□□ 0
SDC1-201ENST00000254351 DSG3P32926 999 aa15.07■□□□□ 0
SDC1-201ENST00000254351 YWHAGP61981 247 aaKnown RBP eCLIP15.07■□□□□ 0
SDC1-201ENST00000254351 AP2B1P63010 937 aa15.07■□□□□ 0
SDC1-201ENST00000254351 FAAP100Q0VG06 881 aa15.07■□□□□ 0
SDC1-201ENST00000254351 KLF1Q13351 362 aaPredicted RBP15.07■□□□□ 0
SDC1-201ENST00000254351 ACAP1Q15027 740 aa15.07■□□□□ 0
SDC1-201ENST00000254351 Q4G0T1 1027 aa15.07■□□□□ 0
SDC1-201ENST00000254351 CDHR3Q6ZTQ4 885 aa15.07■□□□□ 0
SDC1-201ENST00000254351 HAUS6Q7Z4H7 955 aa15.07■□□□□ 0
SDC1-201ENST00000254351 RHOT1Q8IXI2 618 aa15.07■□□□□ 0
SDC1-201ENST00000254351 KLHL23Q8NBE8 558 aa15.07■□□□□ 0
SDC1-201ENST00000254351 MORC4Q8TE76 937 aa15.07■□□□□ 0
SDC1-201ENST00000254351 SHC3Q92529 594 aa15.07■□□□□ 0
SDC1-201ENST00000254351 SLCO2A1Q92959 643 aa15.07■□□□□ 0
SDC1-201ENST00000254351 GCNAQ96QF7 691 aa15.07■□□□□ 0
SDC1-201ENST00000254351 MMP19Q99542 508 aa15.07■□□□□ 0
SDC1-201ENST00000254351 EBF4Q9BQW3 602 aa15.07■□□□□ 0
SDC1-201ENST00000254351 POLR3CQ9BUI4 534 aaPredicted RBP15.07■□□□□ 0
SDC1-201ENST00000254351 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.07■□□□□ 0
SDC1-201ENST00000254351 PCDHGB4Q9UN71 923 aa15.07■□□□□ 0
SDC1-201ENST00000254351 PCDHGB5Q9Y5G0 923 aa15.07■□□□□ 0
SDC1-201ENST00000254351 GRIN3BO60391 1043 aa15.06■□□□□ 0
SDC1-201ENST00000254351 TPP2P29144 1249 aaPredicted RBP15.06■□□□□ 0
SDC1-201ENST00000254351 MSX2P35548 267 aaPredicted RBP15.06■□□□□ 0
SDC1-201ENST00000254351 SREBF1P36956 1147 aa15.06■□□□□ 0
SDC1-201ENST00000254351 CDK7P50613 346 aa15.06■□□□□ 0
SDC1-201ENST00000254351 TRIP10Q15642 601 aa15.06■□□□□ 0
SDC1-201ENST00000254351 MMEL1Q495T6 779 aa15.06■□□□□ 0
SDC1-201ENST00000254351 MARK2Q7KZI7 788 aaKnown RBP15.06■□□□□ 0
SDC1-201ENST00000254351 HELQQ8TDG4 1101 aa15.06■□□□□ 0
SDC1-201ENST00000254351 AGBL1Q96MI9 1066 aa15.06■□□□□ 0
SDC1-201ENST00000254351 TTC25Q96NG3 672 aa15.06■□□□□ 0
SDC1-201ENST00000254351 NACC1Q96RE7 527 aa15.06■□□□□ 0
SDC1-201ENST00000254351 TRIM56Q9BRZ2 755 aaKnown RBP15.06■□□□□ 0
SDC1-201ENST00000254351 RABGEF1Q9UJ41 708 aa15.06■□□□□ 0
SDC1-201ENST00000254351 COL24A1Q17RW2 1714 aa15.06■□□□□ 0
SDC1-201ENST00000254351 ATP8B3O60423 1300 aa15.06■□□□□ 0
SDC1-201ENST00000254351 DDX60LQ5H9U9 1706 aaKnown RBP15.06■□□□□ 0
SDC1-201ENST00000254351 DENND3A2RUS2 1198 aa15.06■□□□□ 0
SDC1-201ENST00000254351 H0YIN7 160 aa15.06■□□□□ 0
SDC1-201ENST00000254351 LIASO43766 372 aa15.06■□□□□ 0
SDC1-201ENST00000254351 ZNF862O60290 1169 aa15.06■□□□□ 0
SDC1-201ENST00000254351 SP4Q02446 784 aa15.06■□□□□ 0
SDC1-201ENST00000254351 GABPAQ06546 454 aa15.06■□□□□ 0
SDC1-201ENST00000254351 PLA2G4FQ68DD2 849 aa15.06■□□□□ 0
SDC1-201ENST00000254351 BBOF1Q8ND07 529 aa15.06■□□□□ 0
SDC1-201ENST00000254351 AKT1S1Q96B36 256 aa15.06■□□□□ 0
SDC1-201ENST00000254351 CFAP36Q96G28 342 aa15.06■□□□□ 0
SDC1-201ENST00000254351 ARHGEF4Q9NR80 690 aa15.06■□□□□ 0
SDC1-201ENST00000254351 RAB20Q9NX57 234 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms