RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 ZAP70P43403 619 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 CSE1LP55060 971 aaKnown RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 TPI1P60174 286 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 XIAPP98170 497 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 SLC12A1Q13621 1099 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 RBBP7Q16576 425 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 KIAA0408Q6ZU52 694 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ZNF248Q8NDW4 579 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 UGT2B28Q9BY64 529 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 TRABDQ9H4I3 376 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 CAAP1Q9H8G2 361 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 JPH1Q9HDC5 661 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ABCB6Q9NP58 842 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 AFF2P51816 1311 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 MYO3AQ8NEV4 1616 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 CCT8L1PA6NM43 557 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 GADD45BO75293 160 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 IL12RB1P42701 662 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 SESN2P58004 480 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 PSMC6P62333 389 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 C2CD6Q53TS8 623 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 SLC27A3Q5K4L6 730 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ZBTB41Q5SVQ8 909 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 TRIQKQ629K1 86 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 PRR23BQ6ZRT6 265 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 DDIASQ8IXT1 998 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 TMIEQ8NEW7 156 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 C15orf40Q8WUR7 153 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 RAPGEF5Q92565 580 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ZC3H7BQ9UGR2 993 aaKnown RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 TULP4Q9NRJ4 1543 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 DENND3A2RUS2 1198 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 ASNA1O43681 348 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 JAK2O60674 1132 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 ACAP1Q15027 740 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 DDR2Q16832 855 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 TMEM270Q6UE05 265 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 SZRD1Q7Z422 152 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 RP9Q8TA86 221 aaKnown RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 WDR41Q9HAD4 459 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 SLC24A2Q9UI40 661 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 CPS1P31327 1500 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 SPDYE5A6NIY4 337 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 GNRH1P01148 92 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 KCNA2P16389 499 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 ALDH1A3P47895 512 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 KCNA1Q09470 495 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 CCDC85BQ15834 202 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 ALG11Q2TAA5 492 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 SPDYE7PQ495Y7 208 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 SYTL3Q4VX76 610 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 LIN54Q6MZP7 749 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 FKBP9P1Q75LS8 142 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 SPATA5L1Q9BVQ7 753 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 ADGRE3Q9BY15 652 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 NGRNQ9NPE2 291 aaKnown RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 PRDM8Q9NQV8 689 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 ARHGEF3Q9NR81 526 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 AURKCQ9UQB9 309 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 SLC4A7Q9Y6M7 1214 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 A0A0A6YYK5 440 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 SNAP91O60641 907 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 MCL1Q07820 350 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 SLC20A2Q08357 652 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 DPYDQ12882 1025 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 USP39Q53GS9 565 aaKnown RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 COL23A1Q86Y22 540 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 PPIL6Q8IXY8 311 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 ZNF333Q96JL9 665 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 RBM15Q96T37 977 aaKnown RBP eCLIP6.31□□□□□ -1.42e-6■■■□□ 15.5
VPS13D-201ENST00000011700 GSTK1Q9Y2Q3 226 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 MED24O75448 989 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 PGK2P07205 417 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 P4HBP07237 508 aaKnown RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 BTDP43251 543 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 SLC26A2P50443 739 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 SMIM11AP58511 58 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 RBP5P82980 135 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 C2orf54Q08AI8 447 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 CRELD2Q6UXH1 353 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 CATSPER3Q86XQ3 398 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 ANO3Q9BYT9 981 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 PRKD2Q9BZL6 878 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 RAD18Q9NS91 495 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 PHF11Q9UIL8 331 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 RBM47A0AV96 593 aaKnown RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 SOWAHDA6NJG2 315 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 FAM220BPB1ANY3 271 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 HOXA2O43364 376 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 CLPTM1O96005 669 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 MPOP05164 745 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 ARSEP51690 589 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 ARHGDIBP52566 201 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 PLD1Q13393 1074 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 MYBPC2Q14324 1141 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 FBXO42Q6P3S6 717 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 YTHDF3Q7Z739 585 aaKnown RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 OR6P1Q8NGX9 317 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 LMTK2Q8IWU2 1503 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 PNMA6EA0A0J9YXQ4 647 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms