RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W YLR053CQ12026 108 aa1.95□□□□□ -2.1
VPS28YPL065W DUR1,2P32528 1835 aaKnown RBP1.95□□□□□ -2.1
VPS28YPL065W QCR2P07257 368 aa1.94□□□□□ -2.1
VPS28YPL065W YBL010CP32788 280 aa1.94□□□□□ -2.1
VPS28YPL065W YRA2P36036 203 aaKnown RBP RIP-Chip data1.94□□□□□ -2.1not detected
VPS28YPL065W YMR030W-AQ3E760 96 aa1.94□□□□□ -2.1
VPS28YPL065W MAK31P23059 88 aa1.93□□□□□ -2.1
VPS28YPL065W PTC1P35182 281 aa1.93□□□□□ -2.1
VPS28YPL065W ETR1P38071 380 aa1.93□□□□□ -2.1
VPS28YPL065W AME1P38313 324 aa1.93□□□□□ -2.1
VPS28YPL065W PAC10P48363 199 aa1.92□□□□□ -2.1
VPS28YPL065W ORM1P53224 222 aa1.92□□□□□ -2.1
VPS28YPL065W MOB1P40484 314 aa1.91□□□□□ -2.1
VPS28YPL065W SBH2P52871 88 aa1.91□□□□□ -2.1
VPS28YPL065W YDR391CQ04170 232 aa1.91□□□□□ -2.1
VPS28YPL065W UBI4P0CG63 381 aaKnown RBP1.9□□□□□ -2.11
VPS28YPL065W NQM1P53228 333 aaPredicted RBP1.9□□□□□ -2.11
VPS28YPL065W MAK3Q03503 176 aa1.9□□□□□ -2.11
VPS28YPL065W HRD1Q08109 551 aa1.9□□□□□ -2.11
VPS28YPL065W YLR046CQ12253 270 aa1.9□□□□□ -2.11
VPS28YPL065W SLM6P38343 150 aa1.89□□□□□ -2.11
VPS28YPL065W LSM3P57743 89 aaKnown RBP1.89□□□□□ -2.11
VPS28YPL065W HHT1P61830 136 aa1.89□□□□□ -2.11
VPS28YPL065W LIP1Q03579 150 aa1.89□□□□□ -2.11
VPS28YPL065W AVO2Q04749 426 aa1.89□□□□□ -2.11
VPS28YPL065W SMD2Q06217 110 aaKnown RBP1.89□□□□□ -2.11
VPS28YPL065W YPR202WQ08993 238 aa1.89□□□□□ -2.11
VPS28YPL065W RPS28BP0C0X0 67 aaKnown RBP1.88□□□□□ -2.11
VPS28YPL065W YBR242WP38331 238 aa1.88□□□□□ -2.11
VPS28YPL065W YDR476CQ03362 224 aa1.88□□□□□ -2.11
VPS28YPL065W RPS28AQ3E7X9 67 aaPredicted RBP1.88□□□□□ -2.11
VPS28YPL065W ATP5P09457 212 aa1.87□□□□□ -2.11
VPS28YPL065W MRPL15P36523 253 aa1.87□□□□□ -2.11
VPS28YPL065W DER1P38307 211 aa1.87□□□□□ -2.11
VPS28YPL065W HUA1P40325 198 aa1.87□□□□□ -2.11
VPS28YPL065W YML079WQ03629 201 aa1.87□□□□□ -2.11
VPS28YPL065W YGR269WP40326 108 aa1.86□□□□□ -2.11
VPS28YPL065W CCC1P47818 322 aa1.86□□□□□ -2.11
VPS28YPL065W UBC8P28263 218 aa1.85□□□□□ -2.11
VPS28YPL065W YDL241WQ07738 123 aa1.85□□□□□ -2.11
VPS28YPL065W YPR203WQ08994 102 aa1.85□□□□□ -2.11
VPS28YPL065W YDL157CQ12082 118 aa1.85□□□□□ -2.11
VPS28YPL065W NSL1Q12143 216 aa1.85□□□□□ -2.11
VPS28YPL065W RPL30P14120 105 aaKnown RBP1.84□□□□□ -2.11
VPS28YPL065W AHT1P29589 182 aa1.84□□□□□ -2.11
VPS28YPL065W HTD2P38790 280 aaKnown RBP1.84□□□□□ -2.11
VPS28YPL065W RPL37AP49166 88 aaKnown RBP1.84□□□□□ -2.11
VPS28YPL065W YDR102CQ03864 110 aa1.84□□□□□ -2.11
VPS28YPL065W YPR114WQ06107 315 aa1.84□□□□□ -2.11
VPS28YPL065W ATG10Q07879 167 aa1.84□□□□□ -2.11
VPS28YPL065W UIP4Q08926 304 aa1.84□□□□□ -2.11
VPS28YPL065W SLH1P53327 1967 aaKnown RBP1.84□□□□□ -2.11
VPS28YPL065W SPS2P08459 502 aa1.83□□□□□ -2.12
VPS28YPL065W YNR064CP53750 290 aa1.83□□□□□ -2.12
VPS28YPL065W YMR007WQ03675 126 aa1.83□□□□□ -2.12
VPS28YPL065W FIT1Q04433 528 aa1.83□□□□□ -2.12
VPS28YPL065W INO4P13902 151 aa1.82□□□□□ -2.12
VPS28YPL065W PEX34P25584 144 aa1.82□□□□□ -2.12
VPS28YPL065W UBC6P33296 250 aaPredicted RBP1.82□□□□□ -2.12
VPS28YPL065W YPT31P38555 223 aaKnown RBP1.82□□□□□ -2.12
VPS28YPL065W YHL037CP38733 133 aa1.82□□□□□ -2.12
VPS28YPL065W DLS1P40366 167 aa1.82□□□□□ -2.12
VPS28YPL065W APQ12P40532 138 aa1.82□□□□□ -2.12
VPS28YPL065W YFL051CP43552 160 aa1.82□□□□□ -2.12
VPS28YPL065W FIP1P45976 327 aa1.82□□□□□ -2.12
VPS28YPL065W YGL193CP53097 103 aa1.82□□□□□ -2.12
VPS28YPL065W BUB2P26448 306 aaPredicted RBP1.81□□□□□ -2.12
VPS28YPL065W SRP102P36057 244 aaPredicted RBP1.81□□□□□ -2.12
VPS28YPL065W ARC19P33204 171 aaKnown RBP1.8□□□□□ -2.12
VPS28YPL065W FIG1P38224 298 aa1.8□□□□□ -2.12
VPS28YPL065W EFG1Q3E705 233 aaKnown RBP1.8□□□□□ -2.12
VPS28YPL065W SHB17P36136 271 aaKnown RBP1.79□□□□□ -2.12
VPS28YPL065W RPS25BP0C0T4 108 aaKnown RBP1.78□□□□□ -2.12
VPS28YPL065W MRS4P23500 304 aa1.78□□□□□ -2.12
VPS28YPL065W RPS25AQ3E792 108 aaPredicted RBP1.78□□□□□ -2.12
VPS28YPL065W PBI2P0CT04 75 aaKnown RBP1.77□□□□□ -2.13
VPS28YPL065W PET20Q99373 253 aa1.77□□□□□ -2.13
VPS28YPL065W SPA2P23201 1466 aaKnown RBP1.76□□□□□ -2.13
VPS28YPL065W CMC4Q3E7A9 73 aa1.76□□□□□ -2.13
VPS28YPL065W ADE6P38972 1358 aaKnown RBP1.75□□□□□ -2.13
VPS28YPL065W YJL218WP40892 196 aaKnown RBP1.75□□□□□ -2.13
VPS28YPL065W CIN5P40917 295 aa1.75□□□□□ -2.13
VPS28YPL065W YGL230CP53074 147 aa1.75□□□□□ -2.13
VPS28YPL065W SPT14P32363 452 aa1.74□□□□□ -2.13
VPS28YPL065W YER181CP40097 107 aa1.74□□□□□ -2.13
VPS28YPL065W GEP7P53171 287 aa1.74□□□□□ -2.13
VPS28YPL065W TAF2P23255 1407 aa1.74□□□□□ -2.13
VPS28YPL065W YKR070WP36151 352 aaKnown RBP1.73□□□□□ -2.13
VPS28YPL065W YEL014CP39999 101 aa1.73□□□□□ -2.13
VPS28YPL065W RIF1P29539 1916 aa1.72□□□□□ -2.13
VPS28YPL065W QCR6P00127 147 aa1.72□□□□□ -2.13
VPS28YPL065W PHO13P19881 312 aa1.72□□□□□ -2.13
VPS28YPL065W PRE1P22141 198 aaKnown RBP1.72□□□□□ -2.13
VPS28YPL065W LCL2Q08045 131 aa1.72□□□□□ -2.13
VPS28YPL065W HSP150P32478 413 aa1.71□□□□□ -2.14
VPS28YPL065W MRPL24P36525 258 aaPredicted RBP1.71□□□□□ -2.14
VPS28YPL065W DCV1P43595 202 aa1.71□□□□□ -2.14
VPS28YPL065W FMN1Q03778 218 aa1.71□□□□□ -2.14
VPS28YPL065W FCY1Q12178 158 aa1.71□□□□□ -2.14
VPS28YPL065W KIN28P06242 306 aa1.7□□□□□ -2.14
Retrieved 100 of 5,963 RNA–protein pairs in 9 ms