RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	QCR9	P22289	66 aa		4.97	□□□□□ -1.61
RPN11	YFR004W	ATP3	P38077	311 aa	Known RBP	4.97	□□□□□ -1.61
RPN11	YFR004W	YHL044W	P38727	235 aa		4.97	□□□□□ -1.61
RPN11	YFR004W	LOC1	P43586	204 aa	Predicted RBP	4.97	□□□□□ -1.61
RPN11	YFR004W	RIB4	P50861	169 aa	Predicted RBP	4.97	□□□□□ -1.61
RPN11	YFR004W	CRH1	P53301	507 aa		4.97	□□□□□ -1.61
RPN11	YFR004W	DAD3	P69850	94 aa		4.97	□□□□□ -1.61
RPN11	YFR004W	DYN2	Q02647	92 aa		4.97	□□□□□ -1.61
RPN11	YFR004W	LPP1	Q04396	274 aa		4.97	□□□□□ -1.61
RPN11	YFR004W	YPR063C	Q12160	140 aa		4.97	□□□□□ -1.61
RPN11	YFR004W	CMC2	Q3E7A4	109 aa		4.97	□□□□□ -1.61
RPN11	YFR004W	YER145C-A	A0A023PYF4	145 aa		4.96	□□□□□ -1.62
RPN11	YFR004W	IMD2	P38697	523 aa	Known RBP	4.96	□□□□□ -1.62
RPN11	YFR004W	YHR138C	P38841	114 aa	Predicted RBP	4.96	□□□□□ -1.62
RPN11	YFR004W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.96	□□□□□ -1.62	not detected
RPN11	YFR004W	PAU5	P43575	122 aa		4.96	□□□□□ -1.62
RPN11	YFR004W	SBH2	P52871	88 aa		4.96	□□□□□ -1.62
RPN11	YFR004W	LST7	P53237	242 aa		4.96	□□□□□ -1.62
RPN11	YFR004W	LIP2	Q06005	328 aa		4.96	□□□□□ -1.62
RPN11	YFR004W	NAT3	Q06504	195 aa		4.96	□□□□□ -1.62
RPN11	YFR004W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.95	□□□□□ -1.62	not detected
RPN11	YFR004W	PAU19	P0CE85	124 aa		4.95	□□□□□ -1.62
RPN11	YFR004W	PAU21	P0CE86	164 aa		4.95	□□□□□ -1.62
RPN11	YFR004W	PAU22	P0CE87	164 aa		4.95	□□□□□ -1.62
RPN11	YFR004W	NHP6A	P11632	93 aa	Known RBP	4.95	□□□□□ -1.62
RPN11	YFR004W	PAU3	P25610	124 aa		4.95	□□□□□ -1.62
RPN11	YFR004W	DAL80	P26343	269 aa		4.95	□□□□□ -1.62
RPN11	YFR004W	DER1	P38307	211 aa		4.95	□□□□□ -1.62
RPN11	YFR004W	YIR020C	P40575	100 aa		4.95	□□□□□ -1.62
RPN11	YFR004W	ATG27	P46989	271 aa		4.95	□□□□□ -1.62
RPN11	YFR004W	YJR015W	P47090	510 aa		4.95	□□□□□ -1.62
RPN11	YFR004W	DUG3	P53871	357 aa		4.95	□□□□□ -1.62
RPN11	YFR004W	CYT2	Q00873	224 aa		4.95	□□□□□ -1.62
RPN11	YFR004W	RPL21A	Q02753	160 aa	Known RBP	4.95	□□□□□ -1.62
RPN11	YFR004W	YHP1	Q04116	353 aa		4.95	□□□□□ -1.62
RPN11	YFR004W	YTH1	Q06102	208 aa	Predicted RBP	4.95	□□□□□ -1.62
RPN11	YFR004W	LOA1	Q06508	300 aa		4.95	□□□□□ -1.62
RPN11	YFR004W	MSA1	Q08471	629 aa		4.95	□□□□□ -1.62
RPN11	YFR004W	RPL21B	Q12672	160 aa	Known RBP	4.95	□□□□□ -1.62
RPN11	YFR004W	YOS1	Q3E834	85 aa		4.95	□□□□□ -1.62
RPN11	YFR004W	RPL39	P04650	51 aa		4.94	□□□□□ -1.62
RPN11	YFR004W	RPL9A	P05738	191 aa	Known RBP	4.94	□□□□□ -1.62
RPN11	YFR004W	MRS3	P10566	314 aa		4.94	□□□□□ -1.62
RPN11	YFR004W	YMR31	P19955	123 aa		4.94	□□□□□ -1.62
RPN11	YFR004W	YGL010W	P25338	174 aa		4.94	□□□□□ -1.62
RPN11	YFR004W	RPS2	P25443	254 aa	Known RBP	4.94	□□□□□ -1.62
RPN11	YFR004W	YOX1	P34161	385 aa		4.94	□□□□□ -1.62
RPN11	YFR004W	YPT10	P38146	199 aa		4.94	□□□□□ -1.62
RPN11	YFR004W	AVT5	P38176	459 aa		4.94	□□□□□ -1.62
RPN11	YFR004W	ECM14	P38836	430 aa		4.94	□□□□□ -1.62
RPN11	YFR004W	HSP10	P38910	106 aa		4.94	□□□□□ -1.62
RPN11	YFR004W	SUR2	P38992	349 aa		4.94	□□□□□ -1.62
RPN11	YFR004W	YER188W	P40103	239 aa		4.94	□□□□□ -1.62
RPN11	YFR004W	YIL163C	P40448	117 aa		4.94	□□□□□ -1.62
RPN11	YFR004W	NCA3	P46955	337 aa		4.94	□□□□□ -1.62
RPN11	YFR004W	YGR149W	P48236	432 aa		4.94	□□□□□ -1.62
RPN11	YFR004W	CUE4	Q04201	117 aa	Predicted RBP	4.94	□□□□□ -1.62
RPN11	YFR004W	RDL1	Q12305	139 aa	Known RBP	4.94	□□□□□ -1.62
RPN11	YFR004W	YOP1	Q12402	180 aa		4.94	□□□□□ -1.62
RPN11	YFR004W	YMR316C-A	I2HB70	103 aa		4.93	□□□□□ -1.62
RPN11	YFR004W	ELF1	P36053	145 aa		4.93	□□□□□ -1.62
RPN11	YFR004W	DAD2	P36162	133 aa		4.93	□□□□□ -1.62
RPN11	YFR004W	NSA2	P40078	261 aa	Known RBP	4.93	□□□□□ -1.62
RPN11	YFR004W	PIR5	P46999	287 aa		4.93	□□□□□ -1.62
RPN11	YFR004W	ABM1	P47146	123 aa		4.93	□□□□□ -1.62
RPN11	YFR004W	CRZ1	P53968	678 aa		4.93	□□□□□ -1.62
RPN11	YFR004W	APS2	Q00381	147 aa		4.93	□□□□□ -1.62
RPN11	YFR004W	SED1	Q01589	338 aa		4.93	□□□□□ -1.62
RPN11	YFR004W	SHH3	Q04487	196 aa		4.93	□□□□□ -1.62
RPN11	YFR004W	GAT3	Q07928	141 aa		4.93	□□□□□ -1.62
RPN11	YFR004W	LDS2	Q08218	356 aa		4.93	□□□□□ -1.62
RPN11	YFR004W	YOR029W	Q12243	111 aa		4.93	□□□□□ -1.62
RPN11	YFR004W	YIL134C-A	Q45U18	67 aa		4.93	□□□□□ -1.62
RPN11	YFR004W	FMP49	A0A023PZB3	126 aa		4.92	□□□□□ -1.62
RPN11	YFR004W	VPS63	O13549	108 aa		4.92	□□□□□ -1.62
RPN11	YFR004W	HMX1	P32339	317 aa		4.92	□□□□□ -1.62
RPN11	YFR004W	YKL102C	P34249	101 aa		4.92	□□□□□ -1.62
RPN11	YFR004W	PHD1	P36093	366 aa		4.92	□□□□□ -1.62
RPN11	YFR004W	YJL163C	P46996	555 aa		4.92	□□□□□ -1.62
RPN11	YFR004W	DSK2	P48510	373 aa		4.92	□□□□□ -1.62
RPN11	YFR004W	RPL9B	P51401	191 aa	Known RBP	4.92	□□□□□ -1.62
RPN11	YFR004W	BOR1	P53838	576 aa		4.92	□□□□□ -1.62
RPN11	YFR004W	OCA2	P53949	197 aa		4.92	□□□□□ -1.62
RPN11	YFR004W	ATC1	Q04005	294 aa		4.92	□□□□□ -1.62
RPN11	YFR004W	YGL258W-A	Q3E740	77 aa		4.92	□□□□□ -1.62
RPN11	YFR004W	RPS22A	P0C0W1	130 aa	Known RBP	4.91	□□□□□ -1.62
RPN11	YFR004W	SCM4	P32564	187 aa		4.91	□□□□□ -1.62
RPN11	YFR004W	CPR5	P35176	225 aa		4.91	□□□□□ -1.62
RPN11	YFR004W	MRPL11	P36521	249 aa	Predicted RBP	4.91	□□□□□ -1.62
RPN11	YFR004W	IRC22	P40006	225 aa		4.91	□□□□□ -1.62
RPN11	YFR004W	YFL015C	P43578	164 aa		4.91	□□□□□ -1.62
RPN11	YFR004W	GPI2	P46961	280 aa		4.91	□□□□□ -1.62
RPN11	YFR004W	MIC27	P50945	234 aa		4.91	□□□□□ -1.62
RPN11	YFR004W	ERV14	P53173	138 aa		4.91	□□□□□ -1.62
RPN11	YFR004W	POS5	Q06892	414 aa		4.91	□□□□□ -1.62
RPN11	YFR004W	YPS3	Q12303	508 aa		4.91	□□□□□ -1.62
RPN11	YFR004W	DCN1	Q12395	269 aa		4.91	□□□□□ -1.62
RPN11	YFR004W	YNR034W-A	Q3E841	98 aa		4.91	□□□□□ -1.62
RPN11	YFR004W	YER175W-A	Q8TGU4	54 aa		4.91	□□□□□ -1.62
RPN11	YFR004W	RPS23A	P0CX29	145 aa	Known RBP	4.9	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 41.1 ms