RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeast

Gene RTR1, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTR1	YER139C	SPC2	Q04969	178 aa		0.75	□□□□□ -2.29
RTR1	YER139C	NAT3	Q06504	195 aa		0.75	□□□□□ -2.29
RTR1	YER139C	SYM1	Q06563	197 aa		0.75	□□□□□ -2.29
RTR1	YER139C	YOR015W	Q12169	119 aa		0.75	□□□□□ -2.29
RTR1	YER139C	ATP20	Q12233	115 aa		0.75	□□□□□ -2.29
RTR1	YER139C	CYR1	P08678	2026 aa	Known RBP	0.75	□□□□□ -2.29
RTR1	YER139C	YGL041W-A	P0C5N3	154 aa		0.74	□□□□□ -2.29
RTR1	YER139C	RRT1	P38192	103 aa		0.74	□□□□□ -2.29
RTR1	YER139C	FMP23	P38231	175 aa		0.74	□□□□□ -2.29
RTR1	YER139C	GPI2	P46961	280 aa		0.74	□□□□□ -2.29
RTR1	YER139C	CCC1	P47818	322 aa		0.74	□□□□□ -2.29
RTR1	YER139C	RCE1	Q03530	315 aa		0.74	□□□□□ -2.29
RTR1	YER139C	LIP1	Q03579	150 aa		0.74	□□□□□ -2.29
RTR1	YER139C	YML079W	Q03629	201 aa		0.74	□□□□□ -2.29
RTR1	YER139C	YDR278C	Q05612	105 aa		0.74	□□□□□ -2.29
RTR1	YER139C	PRP11	Q07350	266 aa	Predicted RBP	0.74	□□□□□ -2.29
RTR1	YER139C	FCY1	Q12178	158 aa		0.74	□□□□□ -2.29
RTR1	YER139C	SPA2	P23201	1466 aa	Known RBP	0.73	□□□□□ -2.29
RTR1	YER139C	VAR1	P02381	398 aa		0.73	□□□□□ -2.29
RTR1	YER139C	COX8	P04039	78 aa		0.73	□□□□□ -2.29
RTR1	YER139C	STF2	P16965	84 aa		0.73	□□□□□ -2.29
RTR1	YER139C	SRP21	P32342	167 aa		0.73	□□□□□ -2.29
RTR1	YER139C	CPR5	P35176	225 aa		0.73	□□□□□ -2.29
RTR1	YER139C	IPI1	P38803	334 aa	Predicted RBP	0.73	□□□□□ -2.29
RTR1	YER139C	CYC2	P38909	366 aa		0.73	□□□□□ -2.29
RTR1	YER139C	YEL073C	P39974	107 aa		0.73	□□□□□ -2.29
RTR1	YER139C	YGR201C	P42936	225 aa		0.73	□□□□□ -2.29
RTR1	YER139C	RBL2	P48606	106 aa	Known RBP	0.73	□□□□□ -2.29
RTR1	YER139C	ORM1	P53224	222 aa		0.73	□□□□□ -2.29
RTR1	YER139C	UBC7	Q02159	165 aa		0.73	□□□□□ -2.29
RTR1	YER139C	DML1	Q03652	475 aa		0.73	□□□□□ -2.29
RTR1	YER139C	RIM9	Q04734	239 aa		0.73	□□□□□ -2.29
RTR1	YER139C	ATG41	Q12048	136 aa		0.73	□□□□□ -2.29
RTR1	YER139C	YDL157C	Q12082	118 aa		0.73	□□□□□ -2.29
RTR1	YER139C	MDM35	O60200	86 aa		0.72	□□□□□ -2.29
RTR1	YER139C	PRE1	P22141	198 aa	Known RBP	0.72	□□□□□ -2.29
RTR1	YER139C	RPC19	P28000	142 aa	Known RBP	0.72	□□□□□ -2.29
RTR1	YER139C	SUI1	P32911	108 aa	Known RBP	0.72	□□□□□ -2.29
RTR1	YER139C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	0.72	□□□□□ -2.29	not detected
RTR1	YER139C	FYV4	P38783	130 aa	Predicted RBP	0.72	□□□□□ -2.29
RTR1	YER139C	YGR269W	P40326	108 aa		0.72	□□□□□ -2.29
RTR1	YER139C	CIN5	P40917	295 aa		0.72	□□□□□ -2.29
RTR1	YER139C	FIP1	P45976	327 aa		0.72	□□□□□ -2.29
RTR1	YER139C	ALB1	P47019	175 aa	Predicted RBP	0.72	□□□□□ -2.29
RTR1	YER139C	SPG1	P50088	95 aa		0.72	□□□□□ -2.29
RTR1	YER139C	YGR039W	P53225	103 aa		0.72	□□□□□ -2.29
RTR1	YER139C	YNR064C	P53750	290 aa		0.72	□□□□□ -2.29
RTR1	YER139C	YDC1	Q02896	317 aa		0.72	□□□□□ -2.29
RTR1	YER139C	YMR007W	Q03675	126 aa		0.72	□□□□□ -2.29
RTR1	YER139C	PST2	Q12335	198 aa	Known RBP	0.72	□□□□□ -2.29
RTR1	YER139C	YMR030W-A	Q3E760	96 aa		0.72	□□□□□ -2.29
RTR1	YER139C	ADE6	P38972	1358 aa	Known RBP	0.71	□□□□□ -2.3
RTR1	YER139C	ACC1	Q00955	2233 aa	Known RBP	0.71	□□□□□ -2.3
RTR1	YER139C	NHP6A	P11632	93 aa	Known RBP	0.71	□□□□□ -2.3
RTR1	YER139C	SEN2	P16658	377 aa		0.71	□□□□□ -2.3
RTR1	YER139C	SUA7	P29055	345 aa	Predicted RBP	0.71	□□□□□ -2.3
RTR1	YER139C	VMA22	P38784	181 aa		0.71	□□□□□ -2.3
RTR1	YER139C	YER181C	P40097	107 aa		0.71	□□□□□ -2.3
RTR1	YER139C	YNL200C	P40165	246 aa	Known RBP	0.71	□□□□□ -2.3
RTR1	YER139C	FLX1	P40464	311 aa		0.71	□□□□□ -2.3
RTR1	YER139C	PHB1	P40961	287 aa		0.71	□□□□□ -2.3
RTR1	YER139C	MPC1	P53157	130 aa	Known RBP	0.71	□□□□□ -2.3
RTR1	YER139C	GEP7	P53171	287 aa		0.71	□□□□□ -2.3
RTR1	YER139C	DAD4	P69851	72 aa		0.71	□□□□□ -2.3
RTR1	YER139C	COF1	Q03048	143 aa	Known RBP	0.71	□□□□□ -2.3
RTR1	YER139C	YHP1	Q04116	353 aa		0.71	□□□□□ -2.3
RTR1	YER139C	RNH202	Q05635	350 aa		0.71	□□□□□ -2.3
RTR1	YER139C	UPS1	Q05776	175 aa		0.71	□□□□□ -2.3
RTR1	YER139C	RAF1	Q06891	181 aa		0.71	□□□□□ -2.3
RTR1	YER139C	ATG10	Q07879	167 aa		0.71	□□□□□ -2.3
RTR1	YER139C	SPC3	Q12133	184 aa		0.71	□□□□□ -2.3
RTR1	YER139C	SLO1	Q3E784	85 aa		0.71	□□□□□ -2.3
RTR1	YER139C	YNL146C-A	Q3E7Z1	64 aa		0.71	□□□□□ -2.3
RTR1	YER139C	SPS2	P08459	502 aa		0.7	□□□□□ -2.3
RTR1	YER139C	PHO13	P19881	312 aa		0.7	□□□□□ -2.3
RTR1	YER139C	HSP12	P22943	109 aa	Known RBP	0.7	□□□□□ -2.3
RTR1	YER139C	MAK31	P23059	88 aa		0.7	□□□□□ -2.3
RTR1	YER139C	UBC8	P28263	218 aa		0.7	□□□□□ -2.3
RTR1	YER139C	YBL010C	P32788	280 aa		0.7	□□□□□ -2.3
RTR1	YER139C	RPB7	P34087	171 aa		0.7	□□□□□ -2.3
RTR1	YER139C	SHB17	P36136	271 aa	Known RBP	0.7	□□□□□ -2.3
RTR1	YER139C	MRPL24	P36525	258 aa	Predicted RBP	0.7	□□□□□ -2.3
RTR1	YER139C	ECM31	P38122	312 aa		0.7	□□□□□ -2.3
RTR1	YER139C	YHL042W	P38729	150 aa		0.7	□□□□□ -2.3
RTR1	YER139C	YHL018W	P38744	120 aa	Predicted RBP	0.7	□□□□□ -2.3
RTR1	YER139C	YEL067C	P39978	195 aa		0.7	□□□□□ -2.3
RTR1	YER139C	CCS1	P40202	249 aa	Known RBP	0.7	□□□□□ -2.3
RTR1	YER139C	HYR1	P40581	163 aa	Known RBP	0.7	□□□□□ -2.3
RTR1	YER139C	YJL218W	P40892	196 aa	Known RBP	0.7	□□□□□ -2.3
RTR1	YER139C	NSE4	P43124	402 aa		0.7	□□□□□ -2.3
RTR1	YER139C	YAE1	P47118	141 aa	Predicted RBP	0.7	□□□□□ -2.3
RTR1	YER139C	EMC4	P53073	190 aa		0.7	□□□□□ -2.3
RTR1	YER139C	THG1	P53215	237 aa	Known RBP	0.7	□□□□□ -2.3
RTR1	YER139C	CWC27	Q02770	301 aa		0.7	□□□□□ -2.3
RTR1	YER139C	EST3	Q03096	181 aa		0.7	□□□□□ -2.3
RTR1	YER139C	FMN1	Q03778	218 aa		0.7	□□□□□ -2.3
RTR1	YER139C	CSN9	Q03981	162 aa		0.7	□□□□□ -2.3
RTR1	YER139C	KEI1	Q06346	221 aa		0.7	□□□□□ -2.3
RTR1	YER139C	VAM10	Q08474	114 aa		0.7	□□□□□ -2.3
RTR1	YER139C	FIT2	Q08906	153 aa		0.7	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 33 ms