RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 PLCZ1Q86YW0 608 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 AKR7LQ8NHP1 331 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 DTD1Q8TEA8 209 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 GANCQ8TET4 914 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 RELTQ969Z4 430 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PCDHB8Q9UN66 801 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 AKAP6Q13023 2319 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PRAMEP78395 509 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 EZH2Q15910 746 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 KLHL40Q2TBA0 621 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 IFI44LQ53G44 452 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 BZW1Q7L1Q6 419 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 ATG9AQ7Z3C6 839 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 METTL3Q86U44 580 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 LONP2Q86WA8 852 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 ZDHHC17Q8IUH5 632 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 SMYD1Q8NB12 490 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 XXYLT1Q8NBI6 393 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 OR4D6Q8NGJ1 314 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 ST8SIA2Q92186 375 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 RSC1A1Q92681 617 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 HS6ST2Q96MM7 605 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TMEM60Q9H2L4 133 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 WDR26Q9H7D7 661 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PNPLA8Q9NP80 782 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 SNX7Q9UNH6 387 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TRDMT1O14717 391 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TREHO43280 583 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 OAZ2O95190 189 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PIGNO95427 931 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 KRT1P04264 644 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 WEE2P0C1S8 567 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PORP16435 677 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 RPL35P42766 123 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 EIF4A1P60842 406 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TAF1BQ53T94 588 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 GPR141Q7Z602 305 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 OR52K2Q8NGK3 314 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 ZCCHC2Q9C0B9 1178 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PIH1D3Q9NQM4 214 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 DNM3Q9UQ16 869 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 HEY1Q9Y5J3 304 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 CYP2D7A0A087X1C5 515 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 MAPK4P31152 587 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 STAT6P42226 847 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PITPNBP48739 271 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 KCNA10Q16322 511 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PKN1Q16512 942 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 C6orf10Q5SRN2 563 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TAS2R42Q7RTR8 314 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 DIS3L2Q8IYB7 885 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PROM2Q8N271 834 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 SUPT20HQ8NEM7 779 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF473Q8WTR7 871 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 FAM216AQ8WUB2 273 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 NLRP3Q96P20 1036 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 ENAMQ9NRM1 1142 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 A0A1W2PRV1 198 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 NDUFS8O00217 210 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 CHRM3P20309 590 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 AFMP43652 599 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PRKG2Q13237 762 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 INTS3Q68E01 1043 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PCSK9Q8NBP7 692 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 GATAD2BQ8WXI9 593 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 NUP85Q9BW27 656 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 BEX2Q9BXY8 128 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 MMRN2Q9H8L6 949 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 DCTN4Q9UJW0 460 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 CASC3O15234 703 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 DFNA5O60443 496 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PEX11AO75192 247 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 ADAMTS2O95450 1211 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 RB1P06400 928 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 STAT1P42224 750 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 EXOSC10Q01780 885 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TNFAIP2Q03169 654 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PRKCZQ05513 592 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 USPL1Q5W0Q7 1092 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 C4orf22Q6V702 233 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 EPM2AIP1Q7L775 607 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 CATSPER3Q86XQ3 398 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 SCUBE3Q8IX30 993 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 NRSN1Q8IZ57 195 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 FAM118BQ9BPY3 351 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PHF20Q9BVI0 1012 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 C8orf33Q9H7E9 229 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 IFT22Q9H7X7 185 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TBC1D14Q9P2M4 693 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TMX2Q9Y320 296 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PTPRZ1P23471 2315 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 ZBED1O96006 694 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 IGFBP1P08833 259 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 HPGDP15428 266 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 NAB1Q13506 487 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF792Q3KQV3 632 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 P3H2Q8IVL5 708 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 RDM1Q8NG50 284 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 MSANTD3Q96H12 275 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 JPH4Q96JJ6 628 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms