RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 SUPT20HQ8NEM7 779 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 OR2W6PQ8NHA6 318 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 TTLL11Q8NHH1 800 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 GDAP1Q8TB36 358 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 ACMSDQ8TDX5 336 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 HSPH1Q92598 858 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 ARL8AQ96BM9 186 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 ZBTB9Q96C00 473 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 RRP36Q96EU6 259 aaKnown RBP3.26□□□□□ -1.89
VIM-210ENST00000637053 LTV1Q96GA3 475 aaPredicted RBP3.26□□□□□ -1.89
VIM-210ENST00000637053 CABS1Q96KC9 395 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 PPP1R13BQ96KQ4 1090 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 KREMEN1Q96MU8 473 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 CCDC43Q96MW1 224 aaKnown RBP3.26□□□□□ -1.89
VIM-210ENST00000637053 NAP1L3Q99457 506 aaPredicted RBP3.26□□□□□ -1.89
VIM-210ENST00000637053 CDC6Q99741 560 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 HGH1Q9BTY7 390 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 HDAC8Q9BY41 377 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 STMN4Q9H169 189 aaPredicted RBP3.26□□□□□ -1.89
VIM-210ENST00000637053 WNT5BQ9H1J7 359 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 BHMT2Q9H2M3 363 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 TNMDQ9H2S6 317 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 RABEP2Q9H5N1 569 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 CRLF2Q9HC73 371 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 PDE7BQ9NP56 450 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 VTA1Q9NP79 307 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 TNFRSF12AQ9NP84 129 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 DMRT3Q9NQL9 472 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.26□□□□□ -1.89
VIM-210ENST00000637053 RXFP3Q9NSD7 469 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 SEPT11Q9NVA2 429 aaKnown RBP3.26□□□□□ -1.89
VIM-210ENST00000637053 SLTMQ9NWH9 1034 aaKnown RBP eCLIP3.26□□□□□ -1.89
VIM-210ENST00000637053 PPP1R14DQ9NXH3 145 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 AATFQ9NY61 560 aaKnown RBP eCLIP3.26□□□□□ -1.89
VIM-210ENST00000637053 ADD3Q9UEY8 706 aaKnown RBP3.26□□□□□ -1.89
VIM-210ENST00000637053 AGO2Q9UKV8 859 aaKnown RBP3.26□□□□□ -1.89
VIM-210ENST00000637053 SUFUQ9UMX1 484 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 PCDHGA9Q9Y5G4 932 aaKnown RBP3.26□□□□□ -1.89
VIM-210ENST00000637053 PCDHGA8Q9Y5G5 932 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 PCDHGA7Q9Y5G6 932 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 PCDHGA6Q9Y5G7 932 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 PCDHGA3Q9Y5H0 932 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 PCDHGA2Q9Y5H1 932 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 CORINQ9Y5Q5 1042 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 SLC4A4Q9Y6R1 1079 aa3.26□□□□□ -1.89
VIM-210ENST00000637053 RSF1Q96T23 1441 aaPredicted RBP3.26□□□□□ -1.89
VIM-210ENST00000637053 ROBO2Q9HCK4 1378 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 DCAF1Q9Y4B6 1507 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 TRBV23-1A0A0A0MS06 115 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 SLC12A8A0AV02 714 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 SH3D21A4FU49 640 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 RGSL1A5PLK6 1076 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 GOLGA8AA7E2F4 631 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 GOLGA8BA8MQT2 603 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 FADS2P1A8MWK0 482 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 FAM227AF5H4B4 570 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 K7EPI3 171 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 ADAMTS3O15072 1205 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 CETN3O15182 167 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 IRAK2O43187 625 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 PRPSAP2O60256 369 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 SMPD2O60906 423 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 SEC22BO75396 215 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 SOAT2O75908 522 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 KCNH1O95259 989 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 SLU7O95391 586 aaKnown RBP3.25□□□□□ -1.89
VIM-210ENST00000637053 ATP5BP06576 529 aaKnown RBP3.25□□□□□ -1.89
VIM-210ENST00000637053 SNRNP70P08621 437 aaKnown RBP3.25□□□□□ -1.89
VIM-210ENST00000637053 SNRPA1P09661 255 aaKnown RBP3.25□□□□□ -1.89
VIM-210ENST00000637053 JMJD7P0C870 316 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 PDHBP11177 359 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 CKBP12277 381 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 HNRNPLP14866 589 aaKnown RBP eCLIP3.25□□□□□ -1.89
VIM-210ENST00000637053 ATF2P15336 505 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 PDGFRAP16234 1089 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 PORP16435 677 aaPredicted RBP3.25□□□□□ -1.89
VIM-210ENST00000637053 LAG3P18627 525 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 PAMP19021 973 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 TRIM21P19474 475 aaKnown RBP3.25□□□□□ -1.89
VIM-210ENST00000637053 AKAP5P24588 427 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 PEX2P28328 305 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 PDIA3P30101 505 aaKnown RBP3.25□□□□□ -1.89
VIM-210ENST00000637053 NR2C2P49116 596 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 ZNF165P49910 485 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 HNMTP50135 292 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 MAPK10P53779 464 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 YBEYP58557 167 aaPredicted RBP3.25□□□□□ -1.89
VIM-210ENST00000637053 RNASE9P60153 205 aaKnown RBP3.25□□□□□ -1.89
VIM-210ENST00000637053 RBP5P82980 135 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 ACY1Q03154 408 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 C17orf67Q0P5P2 114 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 GALNT1Q10472 559 aaPredicted RBP3.25□□□□□ -1.89
VIM-210ENST00000637053 BFSP1Q12934 665 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 BNIP1Q12981 228 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 SNAPC2Q13487 334 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 CUL2Q13617 745 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 ERV3-1Q14264 604 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 MXD4Q14582 209 aaPredicted RBP3.25□□□□□ -1.89
VIM-210ENST00000637053 CLEC16AQ2KHT3 1053 aa3.25□□□□□ -1.89
VIM-210ENST00000637053 ALG11Q2TAA5 492 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms