RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	IGLV3-22	A0A075B6J6	115 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	FAM47DP	A6NHR8	397 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	TRAF5	O00463	557 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	HGS	O14964	777 aa	Predicted RBP	11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	DDX3Y	O15523	660 aa	Known RBP	11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	DNAJC6	O75061	913 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	ZBED1	O96006	694 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	H2AFZ	P0C0S5	128 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	STAT3	P40763	770 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	RPL21	P46778	160 aa	Known RBP	11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	VPS41	P49754	854 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	CHN2	P52757	468 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	ARFIP2	P53365	341 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	POLR2F	P61218	127 aa	Known RBP	11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	GHRHR	Q02643	423 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	RELA	Q04206	551 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	TBL3	Q12788	808 aa	Known RBP	11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	SPARCL1	Q14515	664 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	ECM1	Q16610	540 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	CEP55	Q53EZ4	464 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	NEPRO	Q6NW34	567 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	LRRC8B	Q6P9F7	803 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	H2AFV	Q71UI9	128 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	NLRP9	Q7RTR0	991 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	SATL1	Q86VE3	508 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	CATSPER3	Q86XQ3	398 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	PDSS2	Q86YH6	399 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	APOBEC3F	Q8IUX4	373 aa	Known RBP	11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	DDI1	Q8WTU0	396 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	RIT2	Q99578	217 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	EIF2AK1	Q9BQI3	630 aa	Known RBP	11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	TRAIP	Q9BWF2	469 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	TANGO6	Q9C0B7	1094 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	C17orf75	Q9HAS0	396 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	USP29	Q9HBJ7	922 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	ADAMTS1	Q9UHI8	967 aa		11.33	□□□□□ -0.6
CHD2-223	ENST00000636306	EIF3D	O15371	548 aa	Known RBP eCLIP	11.32	□□□□□ -0.6	1e-7	■■■■□ 19.3
CHD2-223	ENST00000636306	CIB2	O75838	187 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	STK10	O94804	968 aa	Known RBP	11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	HAUS5	O94927	633 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	EIF2S1	P05198	315 aa	Known RBP	11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	CREB1	P16220	341 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	FGFR4	P22455	802 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	PRKCI	P41743	596 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	PTGER2	P43116	358 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	HSD17B4	P51659	736 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	ITGA7	Q13683	1181 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	THOC5	Q13769	683 aa	Known RBP	11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	RAPGEF1	Q13905	1077 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	ZYX	Q15942	572 aa	Known RBP	11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	LONRF1	Q17RB8	773 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	FYB2	Q5VWT5	728 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	DHRS4L2	Q6PKH6	230 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	RBM44	Q6ZP01	1051 aa	Known RBP	11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	CLNK	Q7Z7G1	428 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	ZC3H3	Q8IXZ2	948 aa	Known RBP	11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	DTX3L	Q8TDB6	740 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	CASP10	Q92851	521 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	ZMAT2	Q96NC0	199 aa	Known RBP	11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	ZHX3	Q9H4I2	956 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	OLFML3	Q9NRN5	406 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	PGAP2	Q9UHJ9	254 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	TRAF3IP3	Q9Y228	551 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	FAM32A	Q9Y421	112 aa	Known RBP	11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	PCDHA3	Q9Y5H8	950 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	NCAN	O14594	1321 aa		11.32	□□□□□ -0.6
CHD2-223	ENST00000636306	BOLA2-SMG1P6	H3BVE0	249 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	LSM1	O15116	133 aa	Known RBP	11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	SLC16A3	O15427	465 aa	Known RBP	11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	PRPF4	O43172	522 aa	Known RBP eCLIP	11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	ZNF862	O60290	1169 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	PSMD10	O75832	226 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	FAM13A	O94988	1023 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	LPIN1	Q14693	890 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	PDK4	Q16654	411 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	BMT2	Q1RMZ1	405 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	KLHDC10	Q6PID8	442 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	SLC2A7	Q6PXP3	512 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	PACS1	Q6VY07	963 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	FAM47E	Q6ZV65	393 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	EPM2AIP1	Q7L775	607 aa	Predicted RBP	11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	OTUD6A	Q7L8S5	288 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	VPS36	Q86VN1	386 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	OR6Y1	Q8NGX8	325 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	UHMK1	Q8TAS1	419 aa	Known RBP	11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	HPS3	Q969F9	1004 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	BTBD9	Q96Q07	612 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	NACC1	Q96RE7	527 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	CCDC77	Q9BR77	488 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	ZNF577	Q9BSK1	485 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	MRPS26	Q9BYN8	205 aa	Known RBP	11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	PDGFD	Q9GZP0	370 aa	Predicted RBP	11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	RBM38	Q9H0Z9	239 aa	Known RBP	11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	WHRN	Q9P202	907 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	NAGPA	Q9UK23	515 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	WASF2	Q9Y6W5	498 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	PDXK	O00764	312 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	BUD23	O43709	281 aa	Known RBP	11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	ZBED4	O75132	1171 aa		11.31	□□□□□ -0.6
CHD2-223	ENST00000636306	CDH16	O75309	829 aa		11.31	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms