RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 NAT10Q9H0A0 1025 aaKnown RBP19.38■□□□□ 0.69
CLN3-239ENST00000628023 XYLT2Q9H1B5 865 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 DNAJC25Q9H1X3 360 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 POMKQ9H5K3 350 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 THAP9Q9H5L6 903 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.38■□□□□ 0.696e-9■■■■■ 134.6
CLN3-239ENST00000628023 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.38■□□□□ 0.69
CLN3-239ENST00000628023 SYCE3A1L190 88 aa19.37■□□□□ 0.69
CLN3-239ENST00000628023 MTIF2P46199 727 aaKnown RBP19.37■□□□□ 0.69
CLN3-239ENST00000628023 MARSP56192 900 aaKnown RBP19.37■□□□□ 0.69
CLN3-239ENST00000628023 CBWD6Q4V339 395 aa19.37■□□□□ 0.69
CLN3-239ENST00000628023 CBWD3Q5JTY5 395 aa19.37■□□□□ 0.69
CLN3-239ENST00000628023 CBWD5Q5RIA9 395 aa19.37■□□□□ 0.69
CLN3-239ENST00000628023 PLCD3Q8N3E9 789 aa19.37■□□□□ 0.69
CLN3-239ENST00000628023 KREMEN2Q8NCW0 462 aa19.37■□□□□ 0.69
CLN3-239ENST00000628023 FBXL13Q8NEE6 735 aa19.37■□□□□ 0.69
CLN3-239ENST00000628023 TAF4BQ92750 862 aa19.37■□□□□ 0.69
CLN3-239ENST00000628023 PI4K2AQ9BTU6 479 aa19.37■□□□□ 0.69
CLN3-239ENST00000628023 DDX43Q9NXZ2 648 aaKnown RBP19.37■□□□□ 0.69
CLN3-239ENST00000628023 POLIQ9UNA4 740 aa19.37■□□□□ 0.69
CLN3-239ENST00000628023 WDR27A2RRH5 827 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 TBC1D4O60343 1298 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 OR4Q2P0C623 313 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 ELF1P32519 619 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 LHX1P48742 406 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 FMO5P49326 533 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 MCCD1P59942 119 aaPredicted RBP19.36■□□□□ 0.69
CLN3-239ENST00000628023 NOP14P78316 857 aaKnown RBP19.36■□□□□ 0.69
CLN3-239ENST00000628023 TSPY1Q01534 308 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 CETN1Q12798 172 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 MTMR3Q13615 1198 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 SOWAHAQ2M3V2 549 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 ANO6Q4KMQ2 910 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 HSP90AA4PQ58FG1 418 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 WDR44Q5JSH3 913 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 DPH6Q7L8W6 267 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 TRIM59Q8IWR1 403 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 UBALD2Q8IYN6 164 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 C12orf76Q8N812 135 aaPredicted RBP19.36■□□□□ 0.69
CLN3-239ENST00000628023 TDRD5Q8NAT2 981 aaKnown RBP19.36■□□□□ 0.69
CLN3-239ENST00000628023 SPATA18Q8TC71 538 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 ENOX1Q8TC92 643 aaKnown RBP19.36■□□□□ 0.69
CLN3-239ENST00000628023 ELMO3Q96BJ8 720 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 SNX25Q9H3E2 840 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 PLEKHA4Q9H4M7 779 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 VRTNQ9H8Y1 702 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 SFXN1Q9H9B4 322 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 SORCS3Q9UPU3 1222 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 NFE2L3Q9Y4A8 694 aa19.36■□□□□ 0.69
CLN3-239ENST00000628023 PLXNA3P51805 1871 aa19.35■□□□□ 0.69
CLN3-239ENST00000628023 C2CD4DB7Z1M9 353 aa19.35■□□□□ 0.69
CLN3-239ENST00000628023 C1RP00736 705 aa19.35■□□□□ 0.69
CLN3-239ENST00000628023 ASS1P00966 412 aaKnown RBP19.35■□□□□ 0.69
CLN3-239ENST00000628023 AFPP02771 609 aaKnown RBP19.35■□□□□ 0.69
CLN3-239ENST00000628023 MRE11P49959 708 aa19.35■□□□□ 0.69
CLN3-239ENST00000628023 PTPN5P54829 565 aa19.35■□□□□ 0.69
CLN3-239ENST00000628023 TPGS2Q68CL5 300 aa19.35■□□□□ 0.69
CLN3-239ENST00000628023 SPOPLQ6IQ16 392 aa19.35■□□□□ 0.69
CLN3-239ENST00000628023 OR10T2Q8NGX3 314 aa19.35■□□□□ 0.69
CLN3-239ENST00000628023 ASIC4Q96FT7 647 aa19.35■□□□□ 0.69
CLN3-239ENST00000628023 SMYD3Q9H7B4 428 aa19.35■□□□□ 0.69
CLN3-239ENST00000628023 RAB20Q9NX57 234 aa19.35■□□□□ 0.69
CLN3-239ENST00000628023 FBXW11Q9UKB1 542 aa19.35■□□□□ 0.69
CLN3-239ENST00000628023 USTQ9Y2C2 406 aa19.35■□□□□ 0.69
CLN3-239ENST00000628023 ZDBF2Q9HCK1 2354 aa19.35■□□□□ 0.69
CLN3-239ENST00000628023 PRRG1O14668 218 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 C8AP07357 584 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 WEE2P0C1S8 567 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 ACAT1P24752 427 aaKnown RBP19.34■□□□□ 0.69
CLN3-239ENST00000628023 PCSK1P29120 753 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 MYL5Q02045 173 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 KCNH2Q12809 1159 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 SLC39A12Q504Y0 691 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 LILRA6Q6PI73 481 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 OSTM1Q86WC4 334 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 OR6B3Q8NGW1 331 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 ZNF461Q8TAF7 563 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 HDAC7Q8WUI4 952 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 ACSF2Q96CM8 615 aaPredicted RBP19.34■□□□□ 0.69
CLN3-239ENST00000628023 PGLYRP2Q96PD5 576 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 TMEM209Q96SK2 561 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 RTP3Q9BQQ7 232 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 MRPL45Q9BRJ2 306 aaKnown RBP19.34■□□□□ 0.69
CLN3-239ENST00000628023 CYP4F11Q9HBI6 524 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 CDH22Q9UJ99 828 aa19.34■□□□□ 0.69
CLN3-239ENST00000628023 TACC1O75410 805 aa19.33■□□□□ 0.68
CLN3-239ENST00000628023 PRKCSHP14314 528 aaPredicted RBP19.33■□□□□ 0.68
CLN3-239ENST00000628023 WARSP23381 471 aaKnown RBP19.33■□□□□ 0.68
CLN3-239ENST00000628023 RAP1GAPP47736 663 aa19.33■□□□□ 0.68
CLN3-239ENST00000628023 ZSCAN23Q3MJ62 389 aa19.33■□□□□ 0.68
CLN3-239ENST00000628023 PPM1LQ5SGD2 360 aa19.33■□□□□ 0.68
CLN3-239ENST00000628023 TMC5Q6UXY8 1006 aa19.33■□□□□ 0.68
CLN3-239ENST00000628023 RNF19BQ6ZMZ0 732 aa19.33■□□□□ 0.68
CLN3-239ENST00000628023 CCDC149Q6ZUS6 474 aa19.33■□□□□ 0.68
CLN3-239ENST00000628023 DCP1BQ8IZD4 617 aaKnown RBP19.33■□□□□ 0.68
CLN3-239ENST00000628023 ZDHHC14Q8IZN3 488 aa19.33■□□□□ 0.68
CLN3-239ENST00000628023 SLC7A14Q8TBB6 771 aa19.33■□□□□ 0.68
CLN3-239ENST00000628023 KBTBD7Q8WVZ9 684 aa19.33■□□□□ 0.68
CLN3-239ENST00000628023 SEMA4DQ92854 862 aa19.33■□□□□ 0.68
CLN3-239ENST00000628023 ACBD6Q9BR61 282 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms