RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 DPP9Q86TI2 863 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 PPIL6Q8IXY8 311 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 EMC1Q8N766 993 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 SMC1BQ8NDV3 1235 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 CHST13Q8NET6 341 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 UBA3Q8TBC4 463 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 ACTL9Q8TC94 416 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 DEPDC1BQ8WUY9 529 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 VCPIP1Q96JH7 1222 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 MAGEB18Q96M61 343 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 VCXQ9H320 206 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 UBN1Q9NPG3 1134 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 A1CFQ9NQ94 594 aaKnown RBP9.13□□□□□ -0.95
LIG4-204ENST00000611712 PHTF1Q9UMS5 762 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 MAGED2Q9UNF1 606 aaPredicted RBP9.13□□□□□ -0.95
LIG4-204ENST00000611712 KCNN4O15554 427 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 NQO1P15559 274 aaKnown RBP9.13□□□□□ -0.95
LIG4-204ENST00000611712 PECAM1P16284 738 aaPredicted RBP9.13□□□□□ -0.95
LIG4-204ENST00000611712 SAT1P21673 171 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 MMP13P45452 471 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 MCL1Q07820 350 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 ATG16L1Q676U5 607 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.13□□□□□ -0.95
LIG4-204ENST00000611712 ABCF3Q9NUQ8 709 aa9.13□□□□□ -0.95
LIG4-204ENST00000611712 NOCTQ9UK39 431 aaKnown RBP9.13□□□□□ -0.95
LIG4-204ENST00000611712 STRCP1A6NGW2 1772 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 CCDC195A0A1B0GUA6 201 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 F8VP50 259 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 KITP10721 976 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 CHRNB2P17787 502 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 RPS12P25398 132 aaKnown RBP9.12□□□□□ -0.95
LIG4-204ENST00000611712 DSG3P32926 999 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 PEX19P40855 299 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 GEMIN4P57678 1058 aaKnown RBP9.12□□□□□ -0.95
LIG4-204ENST00000611712 MAMLD1Q13495 774 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 TTLL4Q14679 1199 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 ZACNQ401N2 412 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 TDRD10Q5VZ19 366 aaKnown RBP9.12□□□□□ -0.95
LIG4-204ENST00000611712 CATSPER4Q7RTX7 472 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 BSNDQ8WZ55 320 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 MFSD14AQ96MC6 490 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 NUDCD1Q96RS6 583 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 DHX35Q9H5Z1 703 aaKnown RBP9.12□□□□□ -0.95
LIG4-204ENST00000611712 PHLPP1O60346 1717 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 EIF4E1BA6NMX2 242 aaKnown RBP9.12□□□□□ -0.95
LIG4-204ENST00000611712 SNX3O60493 162 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 CNTN2Q02246 1040 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 MORF4L2Q15014 288 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 SMAD1Q15797 465 aaKnown RBP9.12□□□□□ -0.95
LIG4-204ENST00000611712 KIF12Q96FN5 646 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 SLC12A6Q9UHW9 1150 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 DNALI1O14645 258 aaPredicted RBP9.12□□□□□ -0.95
LIG4-204ENST00000611712 PTGIRP43119 386 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 VCPP55072 806 aaKnown RBP9.12□□□□□ -0.95
LIG4-204ENST00000611712 CCNA1P78396 465 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 EFCAB12Q6NXP0 572 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 CRLF3Q8IUI8 442 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 KATNAL2Q8IYT4 538 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 DNAAF3Q8N9W5 541 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 ASAP3Q8TDY4 903 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 ATXN2LQ8WWM7 1075 aaKnown RBP9.12□□□□□ -0.95
LIG4-204ENST00000611712 CLEC4DQ8WXI8 215 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 BORCS6Q96GS4 357 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 FAM167BQ9BTA0 163 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 PPCSQ9HAB8 311 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 GRHL1Q9NZI5 618 aa9.12□□□□□ -0.95
LIG4-204ENST00000611712 R3HDM2Q9Y2K5 976 aaKnown RBP9.12□□□□□ -0.95
LIG4-204ENST00000611712 TARSP26639 723 aaKnown RBP9.11□□□□□ -0.95
LIG4-204ENST00000611712 ELF1P32519 619 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 RAD23BP54727 409 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 TAS2R40P59535 323 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 ZNF200P98182 395 aaPredicted RBP9.11□□□□□ -0.95
LIG4-204ENST00000611712 OVGP1Q12889 678 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 PTK7Q13308 1070 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 PDZD4Q76G19 769 aaPredicted RBP9.11□□□□□ -0.95
LIG4-204ENST00000611712 WDR49Q8IV35 697 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 KAT2BQ92831 832 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 ALKBH8Q96BT7 664 aaKnown RBP9.11□□□□□ -0.95
LIG4-204ENST00000611712 MMP19Q99542 508 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 LBHD1Q9BQE6 289 aaPredicted RBP9.11□□□□□ -0.95
LIG4-204ENST00000611712 TSSK1BQ9BXA7 367 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 ST6GALNAC4Q9H4F1 302 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 RSAD1Q9HA92 442 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 RIPK3Q9Y572 518 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 ATRNL1Q5VV63 1379 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 PAPPAQ13219 1627 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 PLCH1Q4KWH8 1693 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 ZC3H4Q9UPT8 1303 aaKnown RBP9.11□□□□□ -0.95
LIG4-204ENST00000611712 MAP3K6O95382 1288 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 LSM8O95777 96 aaKnown RBP9.11□□□□□ -0.95
LIG4-204ENST00000611712 ITGB3P05106 788 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 ETS1P14921 441 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 GLRA2P23416 452 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 ADSSP30520 456 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 RAP1GAPP47736 663 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 CLCN3P51790 818 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 HADHBP55084 474 aaKnown RBP9.11□□□□□ -0.95
LIG4-204ENST00000611712 RPL7AP62424 266 aaKnown RBP9.11□□□□□ -0.95
LIG4-204ENST00000611712 NUDCD3Q8IVD9 361 aa9.11□□□□□ -0.95
LIG4-204ENST00000611712 FBXO36Q8NEA4 188 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms