RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	SLFN12L	Q6IEE8	588 aa		13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	ZC3H14	Q6PJT7	736 aa	Known RBP	13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	PARM1	Q6UWI2	310 aa		13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	RTL10	Q7L3V2	364 aa		13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	VSTM4	Q8IW00	320 aa		13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	PJA1	Q8NG27	643 aa		13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	SLC7A14	Q8TBB6	771 aa		13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	FGF13	Q92913	245 aa		13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	FAM213A	Q9BRX8	229 aa		13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	MSTO1	Q9BUK6	570 aa		13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	CXCL16	Q9H2A7	254 aa		13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	NDST4	Q9H3R1	872 aa		13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	METTL14	Q9HCE5	456 aa	Known RBP	13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	POLI	Q9UNA4	740 aa		13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	OTOGL	Q3ZCN5	2332 aa		13.65	□□□□□ -0.22
UPF1-208	ENST00000600012	DMD	P11532	3685 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012		A0A0B4J269	797 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	TULP1	O00294	542 aa	Predicted RBP	13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	CLDN3	O15551	220 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	ADAM12	O43184	909 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	EXTL3	O43909	919 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	B3GAT3	O94766	335 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	PROZ	P22891	400 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	OR1D2	P34982	312 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	PBX1	P40424	430 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	GPC5	P78333	572 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	MCL1	Q07820	350 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	BFSP1	Q12934	665 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	SNRNP35	Q16560	246 aa	Known RBP	13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	SEZ6	Q53EL9	994 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	MPZL3	Q6UWV2	235 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	C1orf210	Q8IVY1	113 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	ST13P5	Q8NFI4	369 aa	Predicted RBP	13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	PLEKHO2	Q8TD55	490 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	UROC1	Q96N76	676 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	PPP1R10	Q96QC0	940 aa	Known RBP	13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	TCHP	Q9BT92	498 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	RPP25	Q9BUL9	199 aa	Known RBP	13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	FOXQ1	Q9C009	403 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	CDT1	Q9H211	546 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	MTRR	Q9UBK8	725 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	TNFSF13B	Q9Y275	285 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012		R4GN57	208 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	PATJ	Q8NI35	1801 aa		13.64	□□□□□ -0.23
UPF1-208	ENST00000600012	MAPK13	O15264	365 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	TRAPPC3	O43617	180 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	SP9	P0CG40	484 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	KRT13	P13646	458 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	TNFSF9	P41273	254 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	ACOT2	P49753	483 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	KLK7	P49862	253 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	DLG4	P78352	724 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	PFKP	Q01813	784 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	PRKCQ	Q04759	706 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	CYP24A1	Q07973	514 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	KCNH2	Q12809	1159 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	PABPC1L	Q4VXU2	614 aa	Known RBP	13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	GLRA4	Q5JXX5	417 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	FKBP15	Q5T1M5	1219 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	CRELD2	Q6UXH1	353 aa	Predicted RBP	13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	ANKS3	Q6ZW76	656 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	INTS8	Q75QN2	995 aa	Known RBP	13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	CEP120	Q8N960	986 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	ITFG1	Q8TB96	612 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	SLC35C1	Q96A29	364 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	MMRN2	Q9H8L6	949 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	PTPRH	Q9HD43	1115 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	BACE2	Q9Y5Z0	518 aa		13.63	□□□□□ -0.23
UPF1-208	ENST00000600012	ZNF292	O60281	2723 aa		13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	KANSL1L	A0AUZ9	987 aa		13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	KIAA0391	O15091	583 aa	Known RBP	13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	OGT	O15294	1046 aa		13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	FAM189A1	O60320	539 aa		13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	LDHA	P00338	332 aa	Known RBP	13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	AFP	P02771	609 aa	Known RBP	13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	PTMA	P06454	111 aa	Known RBP	13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	GLUL	P15104	373 aa		13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	CLCNKB	P51801	687 aa		13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	VAMP7	P51809	220 aa		13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	WNT7B	P56706	349 aa		13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	SYCP1	Q15431	976 aa		13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	MLF2	Q15773	248 aa	Predicted RBP	13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	UPP1	Q16831	310 aa		13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	NPAS3	Q8IXF0	933 aa		13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	CCDC127	Q96BQ5	260 aa		13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	DDX27	Q96GQ7	796 aa	Known RBP	13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	DDX23	Q9BUQ8	820 aa	Known RBP	13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	KIAA1586	Q9HCI6	787 aa		13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	TOPORS	Q9NS56	1045 aa	Predicted RBP	13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	DNMT3B	Q9UBC3	853 aa	Known RBP	13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	CDY1	Q9Y6F8	540 aa		13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	CACNA1A	O00555	2505 aa		13.62	□□□□□ -0.23
UPF1-208	ENST00000600012	ZNF233	A6NK53	670 aa		13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	LRRIQ3	A6PVS8	624 aa	Predicted RBP	13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	MCF2	P10911	925 aa		13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	TKT	P29401	623 aa	Known RBP	13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	GRM5	P41594	1212 aa		13.61	□□□□□ -0.23

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