RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 LRRC32Q14392 662 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 PTPAQ15257 358 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 SF3A1Q15459 793 aaKnown RBP12.69□□□□□ -0.38
CLIP3-204ENST00000590559 DGKKQ5KSL6 1271 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 LARP1BQ659C4 914 aaKnown RBP12.69□□□□□ -0.38
CLIP3-204ENST00000590559 ADALQ6DHV7 355 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 SLFN12LQ6IEE8 588 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 Q6ZS52 159 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 USP49Q70CQ1 688 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 YAF2Q8IY57 180 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 SPPL2BQ8TCT7 592 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 HVCN1Q96D96 273 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 DNAJC19Q96DA6 116 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 FAM212AQ96EL1 285 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 EPSTI1Q96J88 318 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 FAM83CQ9BQN1 747 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 DPP3Q9NY33 737 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 FRYQ5TBA9 3013 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 ATG2BQ96BY7 2078 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 CFAP47Q6ZTR5 3102 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 ASPMQ8IZT6 3477 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 F11P03951 625 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 CDC25CP30307 473 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 HOXC13P31276 330 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 MCM2P49736 904 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 TAF6P49848 677 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 KPNA1P52294 538 aaPredicted RBP12.68□□□□□ -0.38
CLIP3-204ENST00000590559 CYP4F8P98187 520 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 PLCB2Q00722 1185 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 TNK2Q07912 1038 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 KCNA1Q09470 495 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 ARHGAP15Q53QZ3 475 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 WSCD1Q658N2 575 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 LONP2Q86WA8 852 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 NT5DC4Q86YG4 428 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 CMTM8Q8IZV2 173 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 SYNPOQ8N3V7 929 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 ZSWIM2Q8NEG5 633 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 BPIFB1Q8TDL5 484 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 RTKNQ9BST9 563 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 TMLHEQ9NVH6 421 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 ZMYM5Q9UJ78 669 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 GMEB2Q9UKD1 530 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 SMC3Q9UQE7 1217 aa12.68□□□□□ -0.38
CLIP3-204ENST00000590559 OTOL1A6NHN0 477 aaPredicted RBP12.67□□□□□ -0.38
CLIP3-204ENST00000590559 SOBPA7XYQ1 873 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 KPNA7A9QM74 516 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 CHURC1-FNTBB4DL54 471 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 TBCAO75347 108 aaKnown RBP12.67□□□□□ -0.38
CLIP3-204ENST00000590559 FNTBP49356 437 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 SPEM2Q0P670 501 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 SRSF5Q13243 272 aaKnown RBP12.67□□□□□ -0.38
CLIP3-204ENST00000590559 PON2Q15165 354 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 MGAT5BQ3V5L5 792 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 SCARA3Q6AZY7 606 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 WDR5BQ86VZ2 330 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 SFR1Q86XK3 245 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 RIN3Q8TB24 985 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 LEO1Q8WVC0 666 aaPredicted RBP12.67□□□□□ -0.38
CLIP3-204ENST00000590559 PKMYT1Q99640 499 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 SEPT5Q99719 369 aaPredicted RBP12.67□□□□□ -0.38
CLIP3-204ENST00000590559 PYM1Q9BRP8 204 aaKnown RBP12.67□□□□□ -0.38
CLIP3-204ENST00000590559 HPS4Q9NQG7 708 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 SEL1LQ9UBV2 794 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 FBXO2Q9UK22 296 aaPredicted RBP12.67□□□□□ -0.38
CLIP3-204ENST00000590559 CCL26Q9Y258 94 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.67□□□□□ -0.38
CLIP3-204ENST00000590559 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.67□□□□□ -0.38
CLIP3-204ENST00000590559 ACACBO00763 2458 aa12.67□□□□□ -0.38
CLIP3-204ENST00000590559 CHD8Q9HCK8 2581 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 FRMD3A2A2Y4 597 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 MYMKA6NI61 221 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 DPYSL4O14531 572 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 IL18RAPO95256 599 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 KRT18P05783 430 aaKnown RBP12.66□□□□□ -0.38
CLIP3-204ENST00000590559 DDX6P26196 483 aaKnown RBP eCLIP12.66□□□□□ -0.38
CLIP3-204ENST00000590559 CDR1P51861 262 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 NLRP12P59046 1061 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 CUL4AQ13619 759 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 SIM2Q14190 667 aaPredicted RBP12.66□□□□□ -0.38
CLIP3-204ENST00000590559 VEPH1Q14D04 833 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 POSTNQ15063 836 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 LPAL2Q16609 132 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 ITPRIPL2Q3MIP1 535 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 SV2CQ496J9 727 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 TMEM196Q5HYL7 178 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 PKN3Q6P5Z2 889 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 METTL23Q86XA0 190 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 THEM5Q8N1Q8 247 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 KRI1Q8N9T8 703 aaKnown RBP12.66□□□□□ -0.38
CLIP3-204ENST00000590559 TTC8Q8TAM2 541 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 GIPC2Q8TF65 315 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 USP13Q92995 863 aaPredicted RBP12.66□□□□□ -0.38
CLIP3-204ENST00000590559 SMG9Q9H0W8 520 aaKnown RBP12.66□□□□□ -0.38
CLIP3-204ENST00000590559 OLFML3Q9NRN5 406 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 STK17AQ9UEE5 414 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 USP18Q9UMW8 372 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 SRPRBQ9Y5M8 271 aaKnown RBP12.66□□□□□ -0.38
CLIP3-204ENST00000590559 CLIC4Q9Y696 253 aa12.66□□□□□ -0.38
CLIP3-204ENST00000590559 MORC2Q9Y6X9 1032 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms