RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	TSKS	Q9UJT2	592 aa		16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	GTF3C4	Q9UKN8	822 aa		16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	ST3GAL5	Q9UNP4	418 aa		16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	PTCH2	Q9Y6C5	1203 aa		16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	PPEF2	O14830	753 aa		16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	THAP12	O43422	761 aa		16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	RPLP2	P05387	115 aa	Known RBP	16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	CDR1	P51861	262 aa		16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	PRMT2	P55345	433 aa		16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	NAA35	Q5VZE5	725 aa		16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	NT5DC3	Q86UY8	548 aa		16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	C3orf20	Q8ND61	904 aa		16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	CPA5	Q8WXQ8	436 aa		16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	AGO3	Q9H9G7	860 aa	Known RBP	16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	HMX1	Q9NP08	348 aa	Predicted RBP	16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	KLC4	Q9NSK0	619 aa		16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	TRMT13	Q9NUP7	481 aa	Known RBP	16.35	■□□□□ 0.21
DDX39A-209	ENST00000589318	MOXD2P	A6NHM9	499 aa		16.34	■□□□□ 0.21
DDX39A-209	ENST00000589318	SSTR3	P32745	418 aa	Predicted RBP	16.34	■□□□□ 0.21
DDX39A-209	ENST00000589318	THPO	P40225	353 aa		16.34	■□□□□ 0.21
DDX39A-209	ENST00000589318	PTK7	Q13308	1070 aa		16.34	■□□□□ 0.21
DDX39A-209	ENST00000589318	NNT	Q13423	1086 aa		16.34	■□□□□ 0.21
DDX39A-209	ENST00000589318	C11orf91	Q3C1V1	193 aa		16.34	■□□□□ 0.21
DDX39A-209	ENST00000589318	TWF2	Q6IBS0	349 aa	Known RBP	16.34	■□□□□ 0.21
DDX39A-209	ENST00000589318	TRIM72	Q6ZMU5	477 aa		16.34	■□□□□ 0.21
DDX39A-209	ENST00000589318	MON1B	Q7L1V2	547 aa		16.34	■□□□□ 0.21
DDX39A-209	ENST00000589318	DAAM2	Q86T65	1068 aa		16.34	■□□□□ 0.21
DDX39A-209	ENST00000589318	MCOLN2	Q8IZK6	566 aa		16.34	■□□□□ 0.21
DDX39A-209	ENST00000589318	C1orf131	Q8NDD1	294 aa	Known RBP	16.34	■□□□□ 0.21
DDX39A-209	ENST00000589318	TFAP2B	Q92481	460 aa		16.34	■□□□□ 0.21
DDX39A-209	ENST00000589318	ZNF653	Q96CK0	615 aa		16.34	■□□□□ 0.21
DDX39A-209	ENST00000589318	KLK14	Q9P0G3	267 aa		16.34	■□□□□ 0.21
DDX39A-209	ENST00000589318	SMIM28	A0A1B0GU29	152 aa		16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	KIF4A	O95239	1232 aa		16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	KCNE1	P15382	129 aa		16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	RAD23B	P54727	409 aa		16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	YWHAE	P62258	255 aa	Known RBP	16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	PTPN11	Q06124	597 aa	Predicted RBP	16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	ACTN3	Q08043	901 aa	Predicted RBP	16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	IFFO1	Q0D2I5	559 aa		16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	EMB	Q6PCB8	327 aa		16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	ZNF572	Q7Z3I7	529 aa	Predicted RBP	16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	EGFL6	Q8IUX8	553 aa		16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	PASD1	Q8IV76	773 aa		16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	TWNK	Q96RR1	684 aa		16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	RUFY1	Q96T51	708 aa		16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	TSEN34	Q9BSV6	310 aa	Known RBP	16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	CYP3A43	Q9HB55	503 aa		16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	CTTNBP2NL	Q9P2B4	639 aa		16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	HMGXB4	Q9UGU5	601 aa		16.33	■□□□□ 0.21
DDX39A-209	ENST00000589318	CILP	O75339	1184 aa		16.33	■□□□□ 0.2
DDX39A-209	ENST00000589318	RASSF9	O75901	435 aa		16.33	■□□□□ 0.2
DDX39A-209	ENST00000589318	PTP4A2	Q12974	167 aa		16.33	■□□□□ 0.2
DDX39A-209	ENST00000589318	ARHGEF6	Q15052	776 aa		16.33	■□□□□ 0.2
DDX39A-209	ENST00000589318	ZKSCAN8	Q15776	578 aa	Predicted RBP	16.33	■□□□□ 0.2
DDX39A-209	ENST00000589318	PTPRO	Q16827	1216 aa		16.33	■□□□□ 0.2
DDX39A-209	ENST00000589318	FBXO47	Q5MNV8	452 aa		16.33	■□□□□ 0.2
DDX39A-209	ENST00000589318	SYCE1	Q8N0S2	351 aa		16.33	■□□□□ 0.2
DDX39A-209	ENST00000589318	BEST2	Q8NFU1	509 aa		16.33	■□□□□ 0.2
DDX39A-209	ENST00000589318	ERVK-5	Q9HDB9	667 aa		16.33	■□□□□ 0.2
DDX39A-209	ENST00000589318	EHD2	Q9NZN4	543 aa		16.33	■□□□□ 0.2
DDX39A-209	ENST00000589318	PARP2	Q9UGN5	583 aa		16.33	■□□□□ 0.2
DDX39A-209	ENST00000589318	UBQLN1	Q9UMX0	589 aa	Known RBP	16.33	■□□□□ 0.2
DDX39A-209	ENST00000589318	MEIS3P2	A8K0S8	358 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	EZR	P15311	586 aa	Known RBP	16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	TNFRSF8	P28908	595 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	SLC8A1	P32418	973 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	SOX4	Q06945	474 aa	Predicted RBP	16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	INCA1	Q0VD86	236 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	NFX1	Q12986	1120 aa	Known RBP	16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	FAM26D	Q5JW98	314 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	CEP85L	Q5SZL2	805 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	PEX26	Q7Z412	305 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	PHF13	Q86YI8	300 aa	Predicted RBP	16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	MMGT1	Q8N4V1	131 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	SLC43A3	Q8NBI5	491 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	SLC4A11	Q8NBS3	891 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	N4BP2L2	Q92802	583 aa	Predicted RBP	16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	HES6	Q96HZ4	224 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	CALR3	Q96L12	384 aa	Known RBP	16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	GLT1D1	Q96MS3	346 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	TSPAN18	Q96SJ8	248 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	NUP85	Q9BW27	656 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	ELOVL4	Q9GZR5	314 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	EPN3	Q9H201	632 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	AVEN	Q9NQS1	362 aa	Predicted RBP	16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	CHST12	Q9NRB3	414 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	CNOT8	Q9UFF9	292 aa	Known RBP	16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	PCDHGC3	Q9UN70	934 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318	TRIM17	Q9Y577	477 aa		16.32	■□□□□ 0.2
DDX39A-209	ENST00000589318		A0A1W2PQ45	241 aa	Predicted RBP	16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318		A0A1W2PQY0	241 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	PTGES	O14684	152 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	PAEP	P09466	180 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	P4HA1	P13674	534 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	NSF	P46459	744 aa	Known RBP	16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	DNA2	P51530	1060 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	EPHB4	P54760	987 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	RPS6KA1	Q15418	735 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	C2CD6	Q53TS8	623 aa		16.31	■□□□□ 0.2

Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms