RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 GLYCTKQ8IVS8 523 aa16.58■□□□□ 0.24
SS18-216ENST00000580751 KBTBD7Q8WVZ9 684 aa16.58■□□□□ 0.24
SS18-216ENST00000580751 NT5C1BQ96P26 610 aa16.58■□□□□ 0.24
SS18-216ENST00000580751 ACBD6Q9BR61 282 aa16.58■□□□□ 0.24
SS18-216ENST00000580751 BCO2Q9BYV7 579 aa16.58■□□□□ 0.24
SS18-216ENST00000580751 SNX25Q9H3E2 840 aa16.58■□□□□ 0.24
SS18-216ENST00000580751 FAM124BQ9H5Z6 455 aaPredicted RBP16.58■□□□□ 0.24
SS18-216ENST00000580751 IGFLR1Q9H665 355 aa16.58■□□□□ 0.24
SS18-216ENST00000580751 SMYD3Q9H7B4 428 aa16.58■□□□□ 0.24
SS18-216ENST00000580751 CYP3A43Q9HB55 503 aa16.58■□□□□ 0.24
SS18-216ENST00000580751 APOBEC3GQ9HC16 384 aaKnown RBP16.58■□□□□ 0.24
SS18-216ENST00000580751 PLCB1Q9NQ66 1216 aa16.58■□□□□ 0.24
SS18-216ENST00000580751 DDX43Q9NXZ2 648 aaKnown RBP16.58■□□□□ 0.24
SS18-216ENST00000580751 GCNT4Q9P109 453 aa16.58■□□□□ 0.24
SS18-216ENST00000580751 HCFC2Q9Y5Z7 792 aa16.58■□□□□ 0.24
SS18-216ENST00000580751 ADAM12O43184 909 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 RFX1P22670 979 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 TBXAS1P24557 533 aaPredicted RBP16.57■□□□□ 0.24
SS18-216ENST00000580751 TBX2Q13207 712 aaPredicted RBP16.57■□□□□ 0.24
SS18-216ENST00000580751 COL19A1Q14993 1142 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 SYCP1Q15431 976 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 SKIV2LQ15477 1246 aaKnown RBP16.57■□□□□ 0.24
SS18-216ENST00000580751 EXOC3L4Q17RC7 722 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 TPGS2Q68CL5 300 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 TTC39CQ8N584 583 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 EHBP1Q8NDI1 1231 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 OR6B3Q8NGW1 331 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 OR10T2Q8NGX3 314 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 SLC22A17Q8WUG5 538 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 PPM1EQ8WY54 764 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 CASP10Q92851 521 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 PABPC5Q96DU9 382 aaKnown RBP16.57■□□□□ 0.24
SS18-216ENST00000580751 FAM81BQ96LP2 452 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 RTP3Q9BQQ7 232 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 MRPL45Q9BRJ2 306 aaKnown RBP16.57■□□□□ 0.24
SS18-216ENST00000580751 INTS2Q9H0H0 1204 aaKnown RBP16.57■□□□□ 0.24
SS18-216ENST00000580751 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.57■□□□□ 0.243e-16■■■■■ 317.3
SS18-216ENST00000580751 SIK3Q9Y2K2 1263 aa16.57■□□□□ 0.24
SS18-216ENST00000580751 REV3LO60673 3130 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 A0A1W2PQJ5 194 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 TGM5O43548 720 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 LRRN2O75325 713 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 GTF2F1P35269 517 aaKnown RBP eCLIP16.56■□□□□ 0.24
SS18-216ENST00000580751 GNL1P36915 607 aaPredicted RBP16.56■□□□□ 0.24
SS18-216ENST00000580751 ARPP19P56211 112 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 KCNC3Q14003 757 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 CTC1Q2NKJ3 1217 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 LLGL2Q6P1M3 1020 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 TMEM184AQ6ZMB5 413 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 TMC6Q7Z403 805 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 OSTM1Q86WC4 334 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 PALB2Q86YC2 1186 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 DCP1BQ8IZD4 617 aaKnown RBP16.56■□□□□ 0.24
SS18-216ENST00000580751 ZNF461Q8TAF7 563 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 LMO3Q8TAP4 145 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 HDAC7Q8WUI4 952 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 ELMO3Q96BJ8 720 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 DNAI2Q9GZS0 605 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 ZCWPW1Q9H0M4 648 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 NUCKS1Q9H1E3 243 aaKnown RBP16.56■□□□□ 0.24
SS18-216ENST00000580751 DZANK1Q9NVP4 752 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 CLDND1Q9NY35 253 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 MAFFQ9ULX9 164 aa16.56■□□□□ 0.24
SS18-216ENST00000580751 EYSQ5T1H1 3165 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 WDR27A2RRH5 827 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 A8MXQ7 604 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 WEE2P0C1S8 567 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 EPCAMP16422 314 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 TRIM21P19474 475 aaKnown RBP16.55■□□□□ 0.24
SS18-216ENST00000580751 RAP1GAPP47736 663 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 CDH8P55286 799 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 YWHAEP62258 255 aaKnown RBP16.55■□□□□ 0.24
SS18-216ENST00000580751 INCA1Q0VD86 236 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 SMARCB1Q12824 385 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 LRMPQ12912 555 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 GPR17Q13304 367 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 ADAM15Q13444 863 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 CUL2Q13617 745 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 INTS6LQ5JSJ4 861 aaKnown RBP16.55■□□□□ 0.24
SS18-216ENST00000580751 LIN9Q5TKA1 542 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 LILRA6Q6PI73 481 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 TRIM65Q6PJ69 517 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 UNC93AQ86WB7 457 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 CNGA4Q8IV77 575 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 FMNL3Q8IVF7 1028 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 SYT15Q9BQS2 421 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 CRACR2AQ9BSW2 395 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 SDCBP2Q9H190 292 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 PLEKHA4Q9H4M7 779 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 AFF4Q9UHB7 1163 aaKnown RBP16.55■□□□□ 0.24
SS18-216ENST00000580751 FBXW11Q9UKB1 542 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 CDH9Q9ULB4 789 aa16.55■□□□□ 0.24
SS18-216ENST00000580751 ABLIM3O94929 683 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 GLP2RO95838 553 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 PTMAP06454 111 aaKnown RBP16.54■□□□□ 0.24
SS18-216ENST00000580751 OR4Q2P0C623 313 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 ATF2P15336 505 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 ACAT1P24752 427 aaKnown RBP16.54■□□□□ 0.24
SS18-216ENST00000580751 GCNT1Q02742 428 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 ARID5BQ14865 1188 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms