RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.89■□□□□ 0.936e-16■■■■■ 187.5
SS18-209ENST00000578595 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.89■□□□□ 0.93
SS18-209ENST00000578595 CTNND2Q9UQB3 1225 aa20.89■□□□□ 0.93
SS18-209ENST00000578595 PCDHB5Q9Y5E4 795 aa20.89■□□□□ 0.93
SS18-209ENST00000578595 MAPK13O15264 365 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 HCRTO43612 131 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 PPP1R2P41236 205 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 MTMR3Q13615 1198 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 VEPH1Q14D04 833 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 TAF12Q16514 161 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 DCAF17Q5H9S7 520 aaPredicted RBP20.88■□□□□ 0.93
SS18-209ENST00000578595 ZNF667Q5HYK9 610 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 ST13P5Q8NFI4 369 aaPredicted RBP20.88■□□□□ 0.93
SS18-209ENST00000578595 OR6B3Q8NGW1 331 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 ITFG1Q8TB96 612 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 SPPL2BQ8TCT7 592 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 TMEM174Q8WUU8 243 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 ELMO3Q96BJ8 720 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 SYT15Q9BQS2 421 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 IMPG2Q9BZV3 1241 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 ASAH2Q9NR71 780 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 SORCS3Q9UPU3 1222 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 DENND4CQ5VZ89 1909 aa20.88■□□□□ 0.93
SS18-209ENST00000578595 TECTAO75443 2155 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 VNN2O95498 520 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 PDGFRBP09619 1106 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 CCNE1P24864 410 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 ATICP31939 592 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 GCLMP48507 274 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 PSMC1P62191 440 aaKnown RBP20.87■□□□□ 0.93
SS18-209ENST00000578595 LRRC63Q05C16 580 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 NFE2Q16621 373 aaPredicted RBP20.87■□□□□ 0.93
SS18-209ENST00000578595 COBLL1Q53SF7 1204 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 INTS6LQ5JSJ4 861 aaKnown RBP20.87■□□□□ 0.93
SS18-209ENST00000578595 ANKRD40Q6AI12 368 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 DPH6Q7L8W6 267 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 LRRTM3Q86VH5 581 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 SPATA2LQ8IUW3 424 aaPredicted RBP20.87■□□□□ 0.93
SS18-209ENST00000578595 SPATA18Q8TC71 538 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 C2orf15Q8WU43 125 aaKnown RBP20.87■□□□□ 0.93
SS18-209ENST00000578595 ACBD6Q9BR61 282 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 PI4K2AQ9BTU6 479 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 CEP72Q9P209 647 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 CDH7Q9ULB5 785 aa20.87■□□□□ 0.93
SS18-209ENST00000578595 OBSL1O75147 1896 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 GOLGA6L22H0YM25 854 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 PAPLNO95428 1278 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 HLA-DRAP01903 254 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 C4BPAP04003 597 aaKnown RBP20.86■□□□□ 0.93
SS18-209ENST00000578595 LAMP2P13473 410 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 TUFMP49411 452 aaKnown RBP20.86■□□□□ 0.93
SS18-209ENST00000578595 PMS1P54277 932 aaKnown RBP20.86■□□□□ 0.93
SS18-209ENST00000578595 FKBP3Q00688 224 aaKnown RBP20.86■□□□□ 0.93
SS18-209ENST00000578595 SMARCB1Q12824 385 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 TMEM31Q5JXX7 168 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 SV2AQ7L0J3 742 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 HS6ST3Q8IZP7 471 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 CCDC150Q8NCX0 1101 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 KBTBD7Q8WVZ9 684 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 NELFBQ8WX92 580 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 FGF13Q92913 245 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 DHTKD1Q96HY7 919 aaPredicted RBP20.86■□□□□ 0.93
SS18-209ENST00000578595 MRPL45Q9BRJ2 306 aaKnown RBP20.86■□□□□ 0.93
SS18-209ENST00000578595 MKNK1Q9BUB5 465 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 TMLHEQ9NVH6 421 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 GTF3C4Q9UKN8 822 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 MUC3AQ02505 3323 aa20.86■□□□□ 0.93
SS18-209ENST00000578595 ZNF197O14709 1029 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 IKBKBO14920 756 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 VNN1O95497 513 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 P4HA1P13674 534 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 CD44P16070 742 aaKnown RBP20.85■□□□□ 0.93
SS18-209ENST00000578595 CEBPBP17676 345 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 WARSP23381 471 aaKnown RBP20.85■□□□□ 0.93
SS18-209ENST00000578595 RAP1GAPP47736 663 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 CLDN10P78369 228 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 ZXDAP98168 799 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 MORC3Q14149 939 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 CCDC142Q17RM4 750 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 SLC5A9Q2M3M2 681 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 ZACNQ401N2 412 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 CCDC40Q4G0X9 1142 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 ITIH5Q86UX2 942 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 GIPC2Q8TF65 315 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 MCRS1Q96EZ8 462 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 LPIN3Q9BQK8 851 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 SLITRK6Q9H5Y7 841 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 SMYD3Q9H7B4 428 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 KCNK12Q9HB15 430 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 EPS15L1Q9UBC2 864 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 CDH9Q9ULB4 789 aa20.85■□□□□ 0.93
SS18-209ENST00000578595 BICDL2A1A5D9 508 aa20.84■□□□□ 0.93
SS18-209ENST00000578595 A8MXQ7 604 aa20.84■□□□□ 0.93
SS18-209ENST00000578595 SLC16A3O15427 465 aaKnown RBP20.84■□□□□ 0.93
SS18-209ENST00000578595 LMO2P25791 158 aa20.84■□□□□ 0.93
SS18-209ENST00000578595 GNL1P36915 607 aaPredicted RBP20.84■□□□□ 0.93
SS18-209ENST00000578595 MXI1P50539 228 aa20.84■□□□□ 0.93
SS18-209ENST00000578595 STX17P56962 302 aa20.84■□□□□ 0.93
SS18-209ENST00000578595 CYP27A1Q02318 531 aa20.84■□□□□ 0.93
SS18-209ENST00000578595 PPP3CAQ08209 521 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms