RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 KRI1Q8N9T8 703 aaKnown RBP22.76■■□□□ 1.23
VPS53-216ENST00000574029 TTC8Q8TAM2 541 aa22.76■■□□□ 1.23
VPS53-216ENST00000574029 SPPL2BQ8TCT7 592 aa22.76■■□□□ 1.23
VPS53-216ENST00000574029 HVCN1Q96D96 273 aa22.76■■□□□ 1.23
VPS53-216ENST00000574029 IKZF4Q9H2S9 585 aa22.76■■□□□ 1.23
VPS53-216ENST00000574029 CDV3Q9UKY7 258 aaKnown RBP22.76■■□□□ 1.23
VPS53-216ENST00000574029 CHURC1-FNTBB4DL54 471 aa22.75■■□□□ 1.23
VPS53-216ENST00000574029 HRO43593 1189 aa22.75■■□□□ 1.23
VPS53-216ENST00000574029 PPP1R37O75864 691 aa22.75■■□□□ 1.23
VPS53-216ENST00000574029 HAPLN1P10915 354 aaPredicted RBP22.75■■□□□ 1.23
VPS53-216ENST00000574029 ADSSP30520 456 aa22.75■■□□□ 1.23
VPS53-216ENST00000574029 FNTBP49356 437 aa22.75■■□□□ 1.23
VPS53-216ENST00000574029 DMWDQ09019 674 aa22.75■■□□□ 1.23
VPS53-216ENST00000574029 WSCD1Q658N2 575 aa22.75■■□□□ 1.23
VPS53-216ENST00000574029 USP49Q70CQ1 688 aa22.75■■□□□ 1.23
VPS53-216ENST00000574029 SFR1Q86XK3 245 aa22.75■■□□□ 1.23
VPS53-216ENST00000574029 NT5DC4Q86YG4 428 aa22.75■■□□□ 1.23
VPS53-216ENST00000574029 EFCAB13Q8IY85 973 aa22.75■■□□□ 1.23
VPS53-216ENST00000574029 EPSTI1Q96J88 318 aa22.75■■□□□ 1.23
VPS53-216ENST00000574029 STRA6Q9BX79 667 aa22.75■■□□□ 1.23
VPS53-216ENST00000574029 SLC46A2Q9BY10 475 aa22.75■■□□□ 1.23
VPS53-216ENST00000574029 KPNA7A9QM74 516 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 IL18RAPO95256 599 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 RETP07949 1114 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 CNR2P34972 360 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 CDR1P51861 262 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 TNK2Q07912 1038 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 SPEM2Q0P670 501 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 CCINQ13939 588 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 SIM2Q14190 667 aaPredicted RBP22.74■■□□□ 1.23
VPS53-216ENST00000574029 POSTNQ15063 836 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 PON2Q15165 354 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 SV2CQ496J9 727 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 PRR23BQ6ZRT6 265 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 LONP2Q86WA8 852 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 SYNPOQ8N3V7 929 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 GIPC2Q8TF65 315 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 POMGNT1Q8WZA1 660 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 GCNAQ96QF7 691 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 RTKNQ9BST9 563 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 ZMYM5Q9UJ78 669 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 OBSL1O75147 1896 aa22.74■■□□□ 1.23
VPS53-216ENST00000574029 LRP3O75074 770 aa22.73■■□□□ 1.23
VPS53-216ENST00000574029 DYMQ7RTS9 669 aa22.73■■□□□ 1.23
VPS53-216ENST00000574029 TMEM150AQ86TG1 271 aa22.73■■□□□ 1.23
VPS53-216ENST00000574029 DCP1BQ8IZD4 617 aaKnown RBP22.73■■□□□ 1.23
VPS53-216ENST00000574029 CMTM8Q8IZV2 173 aa22.73■■□□□ 1.23
VPS53-216ENST00000574029 SMG9Q9H0W8 520 aaKnown RBP22.73■■□□□ 1.23
VPS53-216ENST00000574029 C2orf42Q9NWW7 574 aa22.73■■□□□ 1.23
VPS53-216ENST00000574029 THG1LQ9NWX6 298 aaKnown RBP22.73■■□□□ 1.23
VPS53-216ENST00000574029 STK17AQ9UEE5 414 aa22.73■■□□□ 1.23
VPS53-216ENST00000574029 HOXA6P31267 233 aa22.72■■□□□ 1.23
VPS53-216ENST00000574029 PTPAQ15257 358 aa22.72■■□□□ 1.23
VPS53-216ENST00000574029 TAF12Q16514 161 aa22.72■■□□□ 1.23
VPS53-216ENST00000574029 ITPRIPL2Q3MIP1 535 aa22.72■■□□□ 1.23
VPS53-216ENST00000574029 ZNF560Q96MR9 790 aa22.72■■□□□ 1.23
VPS53-216ENST00000574029 ABI2Q9NYB9 513 aaPredicted RBP22.72■■□□□ 1.23
VPS53-216ENST00000574029 SEL1LQ9UBV2 794 aa22.72■■□□□ 1.23
VPS53-216ENST00000574029 CCDC39Q9UFE4 941 aa22.72■■□□□ 1.23
VPS53-216ENST00000574029 F11P03951 625 aa22.71■■□□□ 1.23
VPS53-216ENST00000574029 HMGA1P17096 107 aaKnown RBP22.71■■□□□ 1.23
VPS53-216ENST00000574029 PNPLA4P41247 253 aa22.71■■□□□ 1.23
VPS53-216ENST00000574029 WNT7BP56706 349 aa22.71■■□□□ 1.23
VPS53-216ENST00000574029 NLRP12P59046 1061 aa22.71■■□□□ 1.23
VPS53-216ENST00000574029 KCNA1Q09470 495 aa22.71■■□□□ 1.23
VPS53-216ENST00000574029 SRSF5Q13243 272 aaKnown RBP22.71■■□□□ 1.23
VPS53-216ENST00000574029 DNAJC19Q96DA6 116 aa22.71■■□□□ 1.23
VPS53-216ENST00000574029 FAM83CQ9BQN1 747 aa22.71■■□□□ 1.23
VPS53-216ENST00000574029 MRPL44Q9H9J2 332 aaKnown RBP22.71■■□□□ 1.23
VPS53-216ENST00000574029 UPF2Q9HAU5 1272 aaKnown RBP22.71■■□□□ 1.23
VPS53-216ENST00000574029 TMLHEQ9NVH6 421 aa22.71■■□□□ 1.23
VPS53-216ENST00000574029 FBXO2Q9UK22 296 aaPredicted RBP22.71■■□□□ 1.23
VPS53-216ENST00000574029 PCDHB5Q9Y5E4 795 aa22.71■■□□□ 1.23
VPS53-216ENST00000574029 CLIC4Q9Y696 253 aa22.71■■□□□ 1.23
VPS53-216ENST00000574029 SOBPA7XYQ1 873 aa22.7■■□□□ 1.22
VPS53-216ENST00000574029 GAP43P17677 238 aa22.7■■□□□ 1.22
VPS53-216ENST00000574029 DDX6P26196 483 aaKnown RBP eCLIP22.7■■□□□ 1.22
VPS53-216ENST00000574029 L1TD1Q5T7N2 865 aaKnown RBP22.7■■□□□ 1.22
VPS53-216ENST00000574029 HEATR6Q6AI08 1181 aaKnown RBP22.7■■□□□ 1.22
VPS53-216ENST00000574029 FAM213AQ9BRX8 229 aa22.7■■□□□ 1.22
VPS53-216ENST00000574029 GKN1Q9NS71 199 aa22.7■■□□□ 1.22
VPS53-216ENST00000574029 EXOC7Q9UPT5 735 aa22.7■■□□□ 1.22
VPS53-216ENST00000574029 SRPRBQ9Y5M8 271 aaKnown RBP22.7■■□□□ 1.22
VPS53-216ENST00000574029 DYNC1LI1Q9Y6G9 523 aaKnown RBP22.7■■□□□ 1.22
VPS53-216ENST00000574029 ZNF638Q14966 1978 aaKnown RBP22.69■■□□□ 1.22
VPS53-216ENST00000574029 DCDC2BA2VCK2 349 aa22.69■■□□□ 1.22
VPS53-216ENST00000574029 MYMKA6NI61 221 aa22.69■■□□□ 1.22
VPS53-216ENST00000574029 TSPY1Q01534 308 aa22.69■■□□□ 1.22
VPS53-216ENST00000574029 CSRP2Q16527 193 aa22.69■■□□□ 1.22
VPS53-216ENST00000574029 NFE2Q16621 373 aaPredicted RBP22.69■■□□□ 1.22
VPS53-216ENST00000574029 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.69■■□□□ 1.22
VPS53-216ENST00000574029 WDR5BQ86VZ2 330 aa22.69■■□□□ 1.22
VPS53-216ENST00000574029 BRSK2Q8IWQ3 736 aa22.69■■□□□ 1.22
VPS53-216ENST00000574029 PDCL2Q8N4E4 241 aa22.69■■□□□ 1.22
VPS53-216ENST00000574029 MAB21L3Q8N8X9 362 aa22.69■■□□□ 1.22
VPS53-216ENST00000574029 ZSWIM2Q8NEG5 633 aa22.69■■□□□ 1.22
VPS53-216ENST00000574029 LEO1Q8WVC0 666 aaPredicted RBP22.69■■□□□ 1.22
VPS53-216ENST00000574029 USP13Q92995 863 aaPredicted RBP22.69■■□□□ 1.22
VPS53-216ENST00000574029 ACCSQ96QU6 501 aa22.69■■□□□ 1.22
VPS53-216ENST00000574029 HPS4Q9NQG7 708 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms