RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 ASGR2P07307 311 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 HNRNPA1P09651 372 aaKnown RBP eCLIP8.07□□□□□ -1.12
NUP88-205ENST00000572809 IDEP14735 1019 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 GBP2P32456 591 aaPredicted RBP8.07□□□□□ -1.12
NUP88-205ENST00000572809 ACOT2P49753 483 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 AMPD3Q01432 767 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 MRPL58Q14197 206 aaKnown RBP8.07□□□□□ -1.12
NUP88-205ENST00000572809 POSTNQ15063 836 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 ENOX2Q16206 610 aaKnown RBP8.07□□□□□ -1.12
NUP88-205ENST00000572809 PPM1LQ5SGD2 360 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 ZBTB41Q5SVQ8 909 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 LIN9Q5TKA1 542 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 ATL3Q6DD88 541 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 ADALQ6DHV7 355 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 SLC39A4Q6P5W5 647 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 RSPO2Q6UXX9 243 aaPredicted RBP8.07□□□□□ -1.12
NUP88-205ENST00000572809 HFE2Q6ZVN8 426 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 RTL10Q7L3V2 364 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 ZNF461Q8TAF7 563 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 HVCN1Q96D96 273 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 SUSD3Q96L08 255 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 ACCSQ96QU6 501 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 STRA6Q9BX79 667 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 PANK4Q9NVE7 773 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 TUBGCP4Q9UGJ1 667 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 FBXW11Q9UKB1 542 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 CPSF3Q9UKF6 684 aaKnown RBP8.07□□□□□ -1.12
NUP88-205ENST00000572809 AGO2Q9UKV8 859 aaKnown RBP8.07□□□□□ -1.12
NUP88-205ENST00000572809 CFAP45Q9UL16 551 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 UBQLN1Q9UMX0 589 aaKnown RBP8.07□□□□□ -1.12
NUP88-205ENST00000572809 EXOC7Q9UPT5 735 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 STYXL1Q9Y6J8 313 aa8.07□□□□□ -1.12
NUP88-205ENST00000572809 PLXNA3P51805 1871 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 CLUHO75153 1309 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 MTCL1Q9Y4B5 1905 aaKnown RBP8.06□□□□□ -1.12
NUP88-205ENST00000572809 TISP43B9A030 160 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 CDK2AP1O14519 115 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 TBC1D4O60343 1298 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 ABLIM3O94929 683 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 GCNT3O95395 438 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 C8AP07357 584 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 LRPAP1P30533 357 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 HOXA9P31269 272 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 ELF1P32519 619 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 MCM4P33991 863 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 ARPP19P56211 112 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 POU5F1Q01860 360 aaKnown RBP8.06□□□□□ -1.12
NUP88-205ENST00000572809 MTMR3Q13615 1198 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 ALCAMQ13740 583 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 CTXN3Q4LDR2 81 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 AXDND1Q5T1B0 1012 aaPredicted RBP8.06□□□□□ -1.12
NUP88-205ENST00000572809 L1TD1Q5T7N2 865 aaKnown RBP8.06□□□□□ -1.12
NUP88-205ENST00000572809 SPATA1Q5VX52 437 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 JADE1Q6IE81 842 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 SLC8B1Q6J4K2 584 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 SHC4Q6S5L8 630 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 GRASPQ7Z6J2 395 aaPredicted RBP8.06□□□□□ -1.12
NUP88-205ENST00000572809 CCDC65Q8IXS2 484 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 UBALD2Q8IYN6 164 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 SYCP3Q8IZU3 236 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 IQUBQ8NA54 791 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 APPL2Q8NEU8 664 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 BEST2Q8NFU1 509 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 KCNG4Q8TDN1 519 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 POMGNT1Q8WZA1 660 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 TNMDQ9H2S6 317 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 IKZF4Q9H2S9 585 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 CUEDC2Q9H467 287 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 ASB7Q9H672 318 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 KCNK12Q9HB15 430 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 OLFML3Q9NRN5 406 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.06□□□□□ -1.12
NUP88-205ENST00000572809 SCHIP1Q9P0W5 487 aaPredicted RBP8.06□□□□□ -1.12
NUP88-205ENST00000572809 IGSF9Q9P2J2 1179 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 SEPT3Q9UH03 358 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 PCDHA7Q9UN72 937 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 POLIQ9UNA4 740 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 C5orf42Q9H799 3197 aa8.06□□□□□ -1.12
NUP88-205ENST00000572809 CITO14578 2027 aa8.05□□□□□ -1.12
NUP88-205ENST00000572809 FRMD3A2A2Y4 597 aa8.05□□□□□ -1.12
NUP88-205ENST00000572809 WDR27A2RRH5 827 aa8.05□□□□□ -1.12
NUP88-205ENST00000572809 M0QZQ0 153 aa8.05□□□□□ -1.12
NUP88-205ENST00000572809 CCL16O15467 120 aa8.05□□□□□ -1.12
NUP88-205ENST00000572809 POLR2DO15514 142 aaKnown RBP8.05□□□□□ -1.12
NUP88-205ENST00000572809 N4BP1O75113 896 aaKnown RBP8.05□□□□□ -1.12
NUP88-205ENST00000572809 XYLBO75191 536 aa8.05□□□□□ -1.12
NUP88-205ENST00000572809 PRPF6O94906 941 aaKnown RBP8.05□□□□□ -1.12
NUP88-205ENST00000572809 STAU1O95793 577 aaKnown RBP8.05□□□□□ -1.12
NUP88-205ENST00000572809 LDHAP00338 332 aaKnown RBP8.05□□□□□ -1.12
NUP88-205ENST00000572809 LAMP2P13473 410 aa8.05□□□□□ -1.12
NUP88-205ENST00000572809 ATF2P15336 505 aa8.05□□□□□ -1.12
NUP88-205ENST00000572809 PAX3P23760 479 aa8.05□□□□□ -1.12
NUP88-205ENST00000572809 ADSSP30520 456 aa8.05□□□□□ -1.12
NUP88-205ENST00000572809 ME1P48163 572 aa8.05□□□□□ -1.12
NUP88-205ENST00000572809 GUCY2FP51841 1108 aa8.05□□□□□ -1.12
NUP88-205ENST00000572809 EPHA4P54764 986 aa8.05□□□□□ -1.12
NUP88-205ENST00000572809 ROR1Q01973 937 aa8.05□□□□□ -1.12
NUP88-205ENST00000572809 DNM1Q05193 864 aaKnown RBP8.05□□□□□ -1.12
NUP88-205ENST00000572809 TDGQ13569 410 aa8.05□□□□□ -1.12
NUP88-205ENST00000572809 PKP1Q13835 747 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms