RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 NFX1Q12986 1120 aaKnown RBP8.48□□□□□ -1.05
VPS39-213ENST00000570062 TRIM32Q13049 653 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 CNGA2Q16280 664 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 LMBRD2Q68DH5 695 aaPredicted RBP8.48□□□□□ -1.05
VPS39-213ENST00000570062 C11orf63Q6NUN7 778 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 PEX26Q7Z412 305 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 DAAM2Q86T65 1068 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 FAM228AQ86W67 206 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 PDCL2Q8N4E4 241 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 GPR161Q8N6U8 529 aaKnown RBP8.48□□□□□ -1.05
VPS39-213ENST00000570062 UBR7Q8N806 425 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 CEP120Q8N960 986 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 TPCN2Q8NHX9 752 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 SLC35G2Q8TBE7 412 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 ZNF606Q8WXB4 792 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 RUBCNQ92622 972 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 RABGGTAQ92696 567 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 KAT5Q92993 513 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 TMEM176AQ96HP8 235 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 PPP1R16BQ96T49 567 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 NT5C1AQ9BXI3 368 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.48□□□□□ -1.05
VPS39-213ENST00000570062 FAM105AQ9NUU6 356 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 PARVAQ9NVD7 372 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 GDAP2Q9NXN4 497 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 CTTNBP2NLQ9P2B4 639 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 KANSL3Q9P2N6 904 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 NXF1Q9UBU9 619 aaKnown RBP8.48□□□□□ -1.05
VPS39-213ENST00000570062 PTPN22Q9Y2R2 807 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.48□□□□□ -1.05
VPS39-213ENST00000570062 NOC2LQ9Y3T9 749 aaKnown RBP8.48□□□□□ -1.05
VPS39-213ENST00000570062 IPPQ9Y573 584 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 DUSP10Q9Y6W6 482 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 CASP8AP2Q9UKL3 1982 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 SIP14410 1827 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 CCDC66A2RUB6 948 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 CARNS1A5YM72 827 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 MYO1FO00160 1098 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 PIRO00625 290 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 CSDE1O75534 798 aaKnown RBP8.47□□□□□ -1.05
VPS39-213ENST00000570062 RECQL4O94761 1208 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 CHRNA1P02708 482 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 THP07101 528 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 MMEP08473 750 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 SETSIPP0DME0 302 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 CD46P15529 392 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 CETN2P41208 172 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 TAF6P49848 677 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 MMP16P51512 607 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 WNT7BP56706 349 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 SLC8A3P57103 927 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 ZNF200P98182 395 aaPredicted RBP8.47□□□□□ -1.05
VPS39-213ENST00000570062 AMPD2Q01433 879 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 GLE1Q53GS7 698 aaKnown RBP8.47□□□□□ -1.05
VPS39-213ENST00000570062 FBXO47Q5MNV8 452 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 UBXN11Q5T124 520 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 TAF3Q5VWG9 929 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 SPOPLQ6IQ16 392 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 CDR2LQ86X02 465 aaPredicted RBP8.47□□□□□ -1.05
VPS39-213ENST00000570062 TMEM86AQ8N2M4 240 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 TOP6BLQ8N6T0 577 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 SNIP1Q8TAD8 396 aaKnown RBP8.47□□□□□ -1.05
VPS39-213ENST00000570062 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.47□□□□□ -1.05
VPS39-213ENST00000570062 STK32AQ8WU08 396 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 TMEM40Q8WWA1 233 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 MAIP1Q8WWC4 291 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 APBB2Q92870 758 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 TNIP3Q96KP6 325 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 MMS19Q96T76 1030 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 CARD6Q9BX69 1037 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 EIF2AQ9BY44 585 aaKnown RBP8.47□□□□□ -1.05
VPS39-213ENST00000570062 MCOLN1Q9GZU1 580 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 WNT8AQ9H1J5 351 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 ERVK-5Q9HDB9 667 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 CYLDQ9NQC7 956 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 TMEM51Q9NW97 253 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 ADAM22Q9P0K1 906 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 TRIM10Q9UDY6 481 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 PUF60Q9UHX1 559 aaKnown RBP8.47□□□□□ -1.05
VPS39-213ENST00000570062 SIX4Q9UIU6 781 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 TTC7AQ9ULT0 858 aaPredicted RBP8.47□□□□□ -1.05
VPS39-213ENST00000570062 CAPN6Q9Y6Q1 641 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 UMODL1Q5DID0 1318 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 DOCK5Q9H7D0 1870 aa8.47□□□□□ -1.05
VPS39-213ENST00000570062 A0A1W2PQ45 241 aaPredicted RBP8.46□□□□□ -1.06
VPS39-213ENST00000570062 A0A1W2PQY0 241 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 TMCO5BA8MYB1 307 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 KPNA7A9QM74 516 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 HOXA2O43364 376 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 BUB1O43683 1085 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 HUS1O60921 280 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 CILPO75339 1184 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 WFS1O76024 890 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 ATP1A1P05023 1023 aaKnown RBP8.46□□□□□ -1.06
VPS39-213ENST00000570062 PNMA6AP0CW24 399 aaPredicted RBP8.46□□□□□ -1.06
VPS39-213ENST00000570062 ABCB4P21439 1286 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 FGFR4P22455 802 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 MAN1A1P33908 653 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 LHX1P48742 406 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 GSCP56915 257 aaPredicted RBP8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms