RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 GPRC5CQ9NQ84 441 aa12.97□□□□□ -0.33
VPS9D1-207ENST00000568691 KIAA1468Q9P260 1216 aa12.97□□□□□ -0.33
VPS9D1-207ENST00000568691 DDX25Q9UHL0 483 aaKnown RBP12.97□□□□□ -0.33
VPS9D1-207ENST00000568691 KIF26AQ9ULI4 1882 aaPredicted RBP12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 A0A087WWV3 80 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 ANTXRLA6NF34 631 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 POLR2DO15514 142 aaKnown RBP12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 RNF40O75150 1001 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 SLITRK3O94933 977 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 EGFP01133 1207 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 MYL1P05976 194 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 SLFN14P0C7P3 912 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 CYP4A11Q02928 519 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 SCAPQ12770 1279 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 TFDP1Q14186 410 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 PDIA5Q14554 519 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 EPHA7Q15375 998 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 ZRSR1Q15695 479 aaKnown RBP12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 CAMK4Q16566 473 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 UAP1L1Q3KQV9 507 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 PMS2CLQ68D20 193 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 RNF19BQ6ZMZ0 732 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 YAF2Q8IY57 180 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 TMEM130Q8N3G9 435 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 CAMKK1Q8N5S9 505 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 IQUBQ8NA54 791 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 FAM200AQ8TCP9 573 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 E2F7Q96AV8 911 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 ZNF512Q96ME7 567 aaPredicted RBP12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 HPS4Q9NQG7 708 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 ASAH2Q9NR71 780 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 ANO10Q9NW15 660 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 SLC8A2Q9UPR5 921 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 STK24Q9Y6E0 443 aa12.96□□□□□ -0.33
VPS9D1-207ENST00000568691 NUP205Q92621 2012 aa12.96□□□□□ -0.34
VPS9D1-207ENST00000568691 ACACAQ13085 2346 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 KHNYNO15037 678 aaKnown RBP12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 C1QL1O75973 258 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 PRB1P04280 392 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 SIM1P81133 766 aaPredicted RBP12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 ELF2Q15723 593 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 E2F4Q16254 413 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 IL17AQ16552 155 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 FAM187BQ17R55 369 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 ARHGAP29Q52LW3 1261 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 NT5DC1Q5TFE4 455 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 TPGS2Q68CL5 300 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 CDCA2Q69YH5 1023 aaPredicted RBP12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 IQCEQ6IPM2 695 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 RAB44Q7Z6P3 723 aaPredicted RBP12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 CEP57L1Q8IYX8 460 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 TRIML1Q8N9V2 468 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 RIN3Q8TB24 985 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 BSNDQ8WZ55 320 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 FAM20AQ96MK3 541 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 POLR3CQ9BUI4 534 aaPredicted RBP12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 POLR3FQ9H1D9 316 aaPredicted RBP12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 SLITRK6Q9H5Y7 841 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 CCDC39Q9UFE4 941 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 AFF4Q9UHB7 1163 aaKnown RBP12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 GDAQ9Y2T3 454 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 YIPF1Q9Y548 306 aa12.95□□□□□ -0.34
VPS9D1-207ENST00000568691 TRDMT1O14717 391 aaKnown RBP12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 RHOBTB1O94844 696 aa12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 UBA7P41226 1012 aa12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 SEMA3BQ13214 749 aa12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 POSTNQ15063 836 aa12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 LEMD2Q8NC56 503 aa12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 BEST2Q8NFU1 509 aa12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 CRELD1Q96HD1 420 aa12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 EPSTI1Q96J88 318 aa12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 ZMAT2Q96NC0 199 aaKnown RBP12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 FAM83CQ9BQN1 747 aa12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 BPIFA3Q9BQP9 254 aa12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 GPR88Q9GZN0 384 aa12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 NAT10Q9H0A0 1025 aaKnown RBP12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 CCDC113Q9H0I3 377 aa12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 SMG9Q9H0W8 520 aaKnown RBP12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 ZSWIM4Q9H7M6 989 aa12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 EBF1Q9UH73 591 aa12.94□□□□□ -0.34
VPS9D1-207ENST00000568691 SMIM28A0A1B0GU29 152 aa12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 DKC1O60832 514 aaKnown RBP eCLIP12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 SMC2O95347 1197 aa12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 ITPRIPL2Q3MIP1 535 aa12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 XKR4Q5GH76 650 aa12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 TRIM68Q6AZZ1 485 aa12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 ALKAL1Q6UXT8 129 aa12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 USP49Q70CQ1 688 aa12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 OTUD6AQ7L8S5 288 aa12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 KCTD17Q8N5Z5 321 aa12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 CEP120Q8N960 986 aa12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 SPATA20Q8TB22 786 aa12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 HNRNPLLQ8WVV9 542 aaKnown RBP12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 ANP32BQ92688 251 aaKnown RBP12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 PRIMPOLQ96LW4 560 aa12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 RBSNQ9H1K0 784 aa12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 FSCN3Q9NQT6 498 aa12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 TMEM74BQ9NUR3 256 aa12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 PRMT7Q9NVM4 692 aaPredicted RBP12.93□□□□□ -0.34
VPS9D1-207ENST00000568691 OBP2AQ9NY56 170 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms