RNA–Protein interactions for RNA: ENST00000568169.5

TCF4-238, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-238	ENST00000568169	LPIN3	Q9BQK8	851 aa		12.35	□□□□□ -0.43
TCF4-238	ENST00000568169	LSM14B	Q9BX40	385 aa	Known RBP	12.35	□□□□□ -0.43
TCF4-238	ENST00000568169	SLC46A2	Q9BY10	475 aa		12.35	□□□□□ -0.43
TCF4-238	ENST00000568169	ZMYM5	Q9UJ78	669 aa		12.35	□□□□□ -0.43
TCF4-238	ENST00000568169	CEP295	Q9C0D2	2601 aa		12.35	□□□□□ -0.43
TCF4-238	ENST00000568169	MYOF	Q9NZM1	2061 aa		12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	OTOL1	A6NHN0	477 aa	Predicted RBP	12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	KCNK5	O95279	499 aa		12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	CYP11A1	P05108	521 aa		12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	CCDC192	P0DO97	292 aa		12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	ODC1	P11926	461 aa		12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	ATF6	P18850	670 aa		12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	MATR3	P43243	847 aa	Known RBP eCLIP	12.34	□□□□□ -0.43	5e-7	■■■■■ 29.7
TCF4-238	ENST00000568169	GRSF1	Q12849	480 aa	Known RBP eCLIP	12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	GNL2	Q13823	731 aa	Known RBP	12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	VEPH1	Q14D04	833 aa		12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	CMTM8	Q8IZV2	173 aa		12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	CAMKK1	Q8N5S9	505 aa		12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	KCTD17	Q8N5Z5	321 aa		12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	PNMA5	Q96PV4	448 aa		12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	ZCWPW1	Q9H0M4	648 aa		12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	SMG9	Q9H0W8	520 aa	Known RBP	12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	RPF1	Q9H9Y2	349 aa	Known RBP	12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	HPS4	Q9NQG7	708 aa		12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	LIMCH1	Q9UPQ0	1083 aa		12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	SLC8A2	Q9UPR5	921 aa		12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	HELZ	P42694	1942 aa	Known RBP	12.34	□□□□□ -0.43
TCF4-238	ENST00000568169	ATRX	P46100	2492 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	ANO9	A1A5B4	782 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169		H0YCG3	227 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	PIR	O00625	290 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	OGT	O15294	1046 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	PIGR	P01833	764 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	MPL	P40238	635 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	SLC12A3	P55017	1021 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	NCKAP1L	P55160	1127 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	HMGN5	P82970	282 aa	Known RBP	12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	RUNX3	Q13761	415 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	PLK5	Q496M5	336 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	C9orf57	Q5W0N0	161 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	JADE1	Q6IE81	842 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	DTHD1	Q6ZMT9	781 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	TMEM150A	Q86TG1	271 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	CD302	Q8IX05	232 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	BICD1	Q96G01	975 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	GCNA	Q96QF7	691 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	SEPT5	Q99719	369 aa	Predicted RBP	12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	SMOC1	Q9H4F8	434 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	VPS45	Q9NRW7	570 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	KCND2	Q9NZV8	630 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	LARS	Q9P2J5	1176 aa	Known RBP	12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	BAHCC1	Q9P281	2608 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	CEP192	Q8TEP8	1941 aa		12.33	□□□□□ -0.44
TCF4-238	ENST00000568169	IGF2R	P11717	2491 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169		A0A0B4J269	797 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	SOBP	A7XYQ1	873 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	EGF	P01133	1207 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	F11	P03951	625 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	PROS1	P07225	676 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	HAPLN1	P10915	354 aa	Predicted RBP	12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	LIG4	P49917	911 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	NLRP12	P59046	1061 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	SMARCB1	Q12824	385 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	MGAT5B	Q3V5L5	792 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	SLC39A12	Q504Y0	691 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	LRRTM3	Q86VH5	581 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	GIPC2	Q8TF65	315 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	C2orf15	Q8WU43	125 aa	Known RBP	12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	USP13	Q92995	863 aa	Predicted RBP	12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	DUSP15	Q9H1R2	295 aa	Predicted RBP	12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	EBF3	Q9H4W6	596 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	FBRSL1	Q9HCM7	1045 aa	Known RBP	12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	POLR3B	Q9NW08	1133 aa	Predicted RBP	12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	CPSF3	Q9UKF6	684 aa	Known RBP	12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	DSE	Q9UL01	958 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	TBX20	Q9UMR3	447 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	CCL26	Q9Y258	94 aa		12.32	□□□□□ -0.44
TCF4-238	ENST00000568169	CACNA1E	Q15878	2313 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	NPHP3-ACAD11	A0A0J9YXS1	232 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	HNRNPDL	O14979	420 aa	Known RBP	12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	RNF40	O75150	1001 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	NFIC	P08651	508 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	PLA2G4B	P0C869	781 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	HMGA1	P17096	107 aa	Known RBP	12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	DRD1	P21728	446 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	SCP2	P22307	547 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	DDX6	P26196	483 aa	Known RBP eCLIP	12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	GALK1	P51570	392 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	CDR1	P51861	262 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	AMPD2	Q01433	879 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	ZRSR1	Q15695	479 aa	Known RBP	12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	TAF12	Q16514	161 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	ARSH	Q5FYA8	562 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	RNF43	Q68DV7	783 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	TRIM68	Q6AZZ1	485 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	MAB21L3	Q8N8X9	362 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	FAM184A	Q8NB25	1140 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	RIN3	Q8TB24	985 aa		12.31	□□□□□ -0.44
TCF4-238	ENST00000568169	SPPL2B	Q8TCT7	592 aa		12.31	□□□□□ -0.44

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