RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 ITGAVP06756 1048 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 TXNP10599 105 aaKnown RBP6.6□□□□□ -1.35
CLN3-223ENST00000566472 VDRP11473 427 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 TSHRP16473 764 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 CD58P19256 250 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 MARK3P27448 753 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 TMOD1P28289 359 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 CHKAP35790 457 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 SSR1P43307 286 aaKnown RBP6.6□□□□□ -1.35
CLN3-223ENST00000566472 GABRB2P47870 512 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 CCNA1P78396 465 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 PTPN11Q06124 597 aaPredicted RBP6.6□□□□□ -1.35
CLN3-223ENST00000566472 ARHGAP1Q07960 439 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 MKRN3Q13064 507 aaKnown RBP6.6□□□□□ -1.35
CLN3-223ENST00000566472 SNX1Q13596 522 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 STILQ15468 1287 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 OASLQ15646 514 aaKnown RBP6.6□□□□□ -1.35
CLN3-223ENST00000566472 CNGA2Q16280 664 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 AMHR2Q16671 573 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 TMEM132AQ24JP5 1023 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 SEZ6Q53EL9 994 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 LACTB2Q53H82 288 aaPredicted RBP6.6□□□□□ -1.35
CLN3-223ENST00000566472 EEF1DP3Q658K8 133 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 EFCAB12Q6NXP0 572 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 LLGL2Q6P1M3 1020 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 MFSD7Q6UXD7 560 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 CCDC121Q6ZUS5 278 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 CCDC25Q86WR0 208 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 TRIM50Q86XT4 487 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 FBXO16Q8IX29 292 aaPredicted RBP6.6□□□□□ -1.35
CLN3-223ENST00000566472 THNSL1Q8IYQ7 743 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 LRRC71Q8N4P6 559 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 WDTC1Q8N5D0 677 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 CCDC197Q8NCU1 140 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 SLC35B2Q8TB61 432 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 EPS8L3Q8TE67 593 aaKnown RBP6.6□□□□□ -1.35
CLN3-223ENST00000566472 AFG1LQ8WV93 481 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 CNKSR2Q8WXI2 1034 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 ELMO3Q96BJ8 720 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 FAM212AQ96EL1 285 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 SEC16BQ96JE7 1060 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 L3MBTL3Q96JM7 780 aaPredicted RBP6.6□□□□□ -1.35
CLN3-223ENST00000566472 NLRP4Q96MN2 994 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 MCEEQ96PE7 176 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 ZNF317Q96PQ6 595 aaPredicted RBP6.6□□□□□ -1.35
CLN3-223ENST00000566472 NCAPGQ9BPX3 1015 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 PLCD4Q9BRC7 762 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 INO80BQ9C086 356 aaPredicted RBP6.6□□□□□ -1.35
CLN3-223ENST00000566472 TXNRD2Q9NNW7 524 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 UBN1Q9NPG3 1134 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 SENP1Q9P0U3 644 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 FETUBQ9UGM5 382 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 DDX20Q9UHI6 824 aaKnown RBP6.6□□□□□ -1.35
CLN3-223ENST00000566472 ITGA11Q9UKX5 1188 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 DERAQ9Y315 318 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 C2CD2Q9Y426 696 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 LRRD1A4D1F6 860 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 O00370 1275 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 CILPO75339 1184 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 LGALS2P05162 132 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 PGK2P07205 417 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 GSTA1P08263 222 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 STAG3L1P0CL83 205 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 SETSIPP0DME0 302 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 KRT3P12035 628 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 HOXD8P13378 290 aaPredicted RBP6.59□□□□□ -1.35
CLN3-223ENST00000566472 CD19P15391 556 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 PSMA2P25787 234 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 PCK1P35558 622 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 GJC1P36383 396 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 CDKN2BP42772 138 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 CLCN3P51790 818 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 SLC18A1P54219 525 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 RAD23BP54727 409 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 RPL7AP62424 266 aaKnown RBP6.59□□□□□ -1.35
CLN3-223ENST00000566472 IFI35P80217 286 aaPredicted RBP6.59□□□□□ -1.35
CLN3-223ENST00000566472 OGDHQ02218 1023 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 SLC25A11Q02978 314 aaKnown RBP6.59□□□□□ -1.35
CLN3-223ENST00000566472 ACTN3Q08043 901 aaPredicted RBP6.59□□□□□ -1.35
CLN3-223ENST00000566472 INCA1Q0VD86 236 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 CBLBQ13191 982 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 SNAPC2Q13487 334 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 IRF5Q13568 498 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 PCBP1Q15365 356 aaKnown RBP eCLIP6.59□□□□□ -1.35
CLN3-223ENST00000566472 CCDC142Q17RM4 750 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 ZNF792Q3KQV3 632 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 DCAF4L1Q3SXM0 396 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 PTPN20Q4JDL3 420 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 C2CD6Q53TS8 623 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 DENND1BQ6P3S1 775 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 PPP1R21Q6ZMI0 780 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 BBS12Q6ZW61 710 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 CENPUQ71F23 418 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 ARMCX2Q7L311 632 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 EEPD1Q7L9B9 569 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 GSTA5Q7RTV2 222 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 ANKS1BQ7Z6G8 1248 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 PIGWQ7Z7B1 504 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 CPLX4Q7Z7G2 160 aa6.59□□□□□ -1.35
CLN3-223ENST00000566472 PHLDB2Q86SQ0 1253 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms