RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 ID4P47928 161 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 CCR3P51677 355 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 FZD5Q13467 585 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 LRRC32Q14392 662 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 GPR158Q5T848 1215 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 FAM173BQ6P4H8 233 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 RALGPS2Q86X27 583 aaPredicted RBP16.06■□□□□ 0.16
CLN3-222ENST00000566083 EFCAB13Q8IY85 973 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 ZBTB44Q8NCP5 570 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 NELL1Q92832 810 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 TMEM209Q96SK2 561 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 ACBD6Q9BR61 282 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 KIAA1586Q9HCI6 787 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 ABCB6Q9NP58 842 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 NDRG2Q9UN36 371 aaKnown RBP16.06■□□□□ 0.16
CLN3-222ENST00000566083 ZNF292O60281 2723 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 ANK1P16157 1881 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 VPS13AQ96RL7 3174 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 ARNTLO00327 626 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 HAPLN1P10915 354 aaPredicted RBP16.05■□□□□ 0.16
CLN3-222ENST00000566083 KPNA1P52294 538 aaPredicted RBP16.05■□□□□ 0.16
CLN3-222ENST00000566083 RBP5P82980 135 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 MYL7Q01449 175 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 KCNA1Q09470 495 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 MYO1EQ12965 1108 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 MTAPQ13126 283 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 ZNF687Q8N1G0 1237 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 GPD1LQ8N335 351 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 CSGALNACT2Q8N6G5 542 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 SUMF1Q8NBK3 374 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 LINC00301Q8NCQ3 95 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 LEO1Q8WVC0 666 aaPredicted RBP16.05■□□□□ 0.16
CLN3-222ENST00000566083 BACH2Q9BYV9 841 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 LMAN1LQ9HAT1 526 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 UXTQ9UBK9 157 aaPredicted RBP16.05■□□□□ 0.16
CLN3-222ENST00000566083 AGAP1Q9UPQ3 857 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 CEP250Q9BV73 2442 aa16.05■□□□□ 0.16
CLN3-222ENST00000566083 SHISA7A6NL88 538 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 SPTLC2O15270 562 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 ITGB3P05106 788 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 TMEM191BP0C7N4 346 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 CSH1P0DML2 217 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 CSH2P0DML3 217 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 CCNE1P24864 410 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 PCSK1P29120 753 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 POLR2BP30876 1174 aaKnown RBP16.04■□□□□ 0.16
CLN3-222ENST00000566083 LHX1P48742 406 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 RPL10AP62906 217 aaKnown RBP16.04■□□□□ 0.16
CLN3-222ENST00000566083 DGKKQ5KSL6 1271 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 DPH6Q7L8W6 267 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 TTC9BQ8N6N2 239 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 TOP6BLQ8N6T0 577 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 CELF5Q8N6W0 485 aaKnown RBP16.04■□□□□ 0.16
CLN3-222ENST00000566083 IQUBQ8NA54 791 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 BPIFB1Q8TDL5 484 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 SAAL1Q96ER3 474 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 ANKRD36BP1Q96IX9 119 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 PANK2Q9BZ23 570 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 GDAP2Q9NXN4 497 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 ABI2Q9NYB9 513 aaPredicted RBP16.04■□□□□ 0.16
CLN3-222ENST00000566083 TCHHQ07283 1943 aa16.04■□□□□ 0.16
CLN3-222ENST00000566083 ZNF233A6NK53 670 aa16.03■□□□□ 0.16
CLN3-222ENST00000566083 NRG2O14511 850 aaPredicted RBP16.03■□□□□ 0.16
CLN3-222ENST00000566083 LILRB5O75023 590 aa16.03■□□□□ 0.16
CLN3-222ENST00000566083 YEATS4O95619 227 aa16.03■□□□□ 0.16
CLN3-222ENST00000566083 ATF6P18850 670 aa16.03■□□□□ 0.16
CLN3-222ENST00000566083 AVPR1AP37288 418 aa16.03■□□□□ 0.16
CLN3-222ENST00000566083 SNRPFP62306 86 aaKnown RBP16.03■□□□□ 0.16
CLN3-222ENST00000566083 LRRTM3Q86VH5 581 aa16.03■□□□□ 0.16
CLN3-222ENST00000566083 SYNPOQ8N3V7 929 aa16.03■□□□□ 0.16
CLN3-222ENST00000566083 SPEM1Q8N4L4 309 aa16.03■□□□□ 0.16
CLN3-222ENST00000566083 PDILTQ8N807 584 aa16.03■□□□□ 0.16
CLN3-222ENST00000566083 C1orf127Q8N9H9 656 aa16.03■□□□□ 0.16
CLN3-222ENST00000566083 MKNK1Q9BUB5 465 aa16.03■□□□□ 0.16
CLN3-222ENST00000566083 EPC1Q9H2F5 836 aa16.03■□□□□ 0.16
CLN3-222ENST00000566083 MAGEF1Q9HAY2 307 aa16.03■□□□□ 0.16
CLN3-222ENST00000566083 KBTBD4Q9NVX7 518 aa16.03■□□□□ 0.16
CLN3-222ENST00000566083 PATJQ8NI35 1801 aa16.03■□□□□ 0.16
CLN3-222ENST00000566083 MYBPHLA2RUH7 354 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 TULP1O00294 542 aaPredicted RBP16.02■□□□□ 0.16
CLN3-222ENST00000566083 EIF3DO15371 548 aaKnown RBP eCLIP16.02■□□□□ 0.16
CLN3-222ENST00000566083 CUTAO60888 179 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 PRPF40AO75400 957 aaKnown RBP16.02■□□□□ 0.16
CLN3-222ENST00000566083 SOAT2O75908 522 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 TNNC2P02585 160 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 KRT19P08727 400 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 SDHBP21912 280 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 CXCL12P48061 93 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 CASP5P51878 434 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 AMPD2Q01433 879 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 STXBP5Q5T5C0 1151 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 CNNM4Q6P4Q7 775 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 CMTM8Q8IZV2 173 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 PDCL2Q8N4E4 241 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 MRPS31Q92665 395 aaKnown RBP16.02■□□□□ 0.16
CLN3-222ENST00000566083 EXOC4Q96A65 974 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 FUBP3Q96I24 572 aaKnown RBP eCLIP16.02■□□□□ 0.16
CLN3-222ENST00000566083 LPIN3Q9BQK8 851 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 CBWD1Q9BRT8 395 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 KIF9Q9HAQ2 790 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms