RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 MDH1P40925 334 aaKnown RBP11.24□□□□□ -0.61
CUX1-217ENST00000558836 ITGA8P53708 1063 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 RAD23BP54727 409 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 CCNA1P78396 465 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 KLF1Q13351 362 aaPredicted RBP11.24□□□□□ -0.61
CUX1-217ENST00000558836 MTHFD1LQ6UB35 978 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 RUFY4Q6ZNE9 571 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 GPR142Q7Z601 462 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 VCPIP1Q96JH7 1222 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 CPXM1Q96SM3 734 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 SYNCQ9H7C4 482 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 CDHR5Q9HBB8 845 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 AAASQ9NRG9 546 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 PRMT7Q9NVM4 692 aaPredicted RBP11.24□□□□□ -0.61
CUX1-217ENST00000558836 AGAP1Q9UPQ3 857 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 LRRD1A4D1F6 860 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 KRT1P04264 644 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 NFX1Q12986 1120 aaKnown RBP11.24□□□□□ -0.61
CUX1-217ENST00000558836 GLRA4Q5JXX5 417 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 MARCH8Q5T0T0 291 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 ILDR2Q71H61 639 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 B4GALNT4Q76KP1 1039 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 C12orf29Q8N999 325 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 C12orf50Q8NA57 414 aaPredicted RBP11.24□□□□□ -0.61
CUX1-217ENST00000558836 PPTC7Q8NI37 304 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 ELOVL4Q9GZR5 314 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 PCSK1NQ9UHG2 260 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 IP6K2Q9UHH9 426 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 DNPEPQ9ULA0 475 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 ANK1P16157 1881 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 E7EVH7 732 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 MTM1Q13496 603 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 LONRF1Q17RB8 773 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 EXOC8Q8IYI6 725 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 HEXIM2Q96MH2 286 aaKnown RBP11.23□□□□□ -0.61
CUX1-217ENST00000558836 KATNBL1Q9H079 304 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 MKI67P46013 3256 aaKnown RBP11.23□□□□□ -0.61
CUX1-217ENST00000558836 ASAP2O43150 1006 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 DYNC1LI2O43237 492 aaPredicted RBP11.23□□□□□ -0.61
CUX1-217ENST00000558836 RIPK2O43353 540 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 PSTPIP1O43586 416 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 GRAP2O75791 330 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 IVDP26440 423 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 PSMC1P62191 440 aaKnown RBP11.23□□□□□ -0.61
CUX1-217ENST00000558836 GRM1Q13255 1194 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 SURF1Q15526 300 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 GRIK4Q16099 956 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 KYNUQ16719 465 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 RAB6CQ53S08 254 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 ZNF484Q5JVG2 852 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 KATNAL2Q8IYT4 538 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 SLC4A11Q8NBS3 891 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 SHCBP1Q8NEM2 672 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 NPLOC4Q8TAT6 608 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 HPDLQ96IR7 371 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 APOL6Q9BWW8 343 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 RAB6CQ9H0N0 254 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 CDC42EP4Q9H3Q1 356 aaKnown RBP11.23□□□□□ -0.61
CUX1-217ENST00000558836 CPA4Q9UI42 421 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 RRP15Q9Y3B9 282 aaKnown RBP11.23□□□□□ -0.61
CUX1-217ENST00000558836 CEP83Q9Y592 693 aa11.23□□□□□ -0.61
CUX1-217ENST00000558836 TCRBV5S1A1TA0A578 114 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 VGLL3A8MV65 326 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 PPEF2O14830 753 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 ERBB2P04626 1255 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 CALB1P05937 261 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 CETPP11597 493 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 KRT3P12035 628 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 PSMA2P25787 234 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 PLCB3Q01970 1234 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 TAF5Q15542 800 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 SH3PXD2AQ5TCZ1 1133 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 C10orf67Q8IYJ2 551 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 OR6J1Q8NGC5 347 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 ATL2Q8NHH9 583 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 MAML3Q96JK9 1138 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 SLITRK1Q96PX8 696 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 LPIN3Q9BQK8 851 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 ZNF148Q9UQR1 794 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 PPME1Q9Y570 386 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 TSPAN1O60635 241 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 CD48P09326 243 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 ATF2P15336 505 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 IL1R2P27930 398 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 PPP2R2AP63151 447 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 ADCY1Q08828 1119 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 ZNF365Q70YC5 407 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 SRLQ86TD4 932 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 ARFGAP1Q8N6T3 406 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 EXD1Q8NHP7 514 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 CXorf38Q8TB03 319 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 SELENOSQ9BQE4 189 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 METTL5Q9NRN9 209 aaKnown RBP11.22□□□□□ -0.61
CUX1-217ENST00000558836 CTNNAL1Q9UBT7 734 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 SLC12A6Q9UHW9 1150 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 PLXNA1Q9UIW2 1896 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 M0QYV0 167 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 HCRTO43612 131 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 GAS8O95995 478 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 IFNB1P01574 187 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms