RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 TMCO4Q5TGY1 634 aa11.19□□□□□ -0.62
ACTN1-216ENST00000556083 FAM47EQ6ZV65 393 aa11.19□□□□□ -0.62
ACTN1-216ENST00000556083 TMEM169Q96HH4 297 aa11.19□□□□□ -0.62
ACTN1-216ENST00000556083 PPP1R16BQ96T49 567 aa11.19□□□□□ -0.62
ACTN1-216ENST00000556083 SYTL2Q9HCH5 934 aa11.19□□□□□ -0.62
ACTN1-216ENST00000556083 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.19□□□□□ -0.62
ACTN1-216ENST00000556083 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.19□□□□□ -0.62
ACTN1-216ENST00000556083 G3BP2Q9UN86 482 aaKnown RBP11.19□□□□□ -0.62
ACTN1-216ENST00000556083 MAPRE3Q9UPY8 281 aa11.19□□□□□ -0.62
ACTN1-216ENST00000556083 CDYLQ9Y232 598 aa11.19□□□□□ -0.62
ACTN1-216ENST00000556083 AXIN2Q9Y2T1 843 aa11.19□□□□□ -0.62
ACTN1-216ENST00000556083 MORC2Q9Y6X9 1032 aaPredicted RBP11.19□□□□□ -0.62
ACTN1-216ENST00000556083 LRRC7Q96NW7 1537 aa11.19□□□□□ -0.62
ACTN1-216ENST00000556083 STRNO43815 780 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 ALDH1A2O94788 518 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 NMT1P30419 496 aaKnown RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 PGM1P36871 562 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 PTGER2P43116 358 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 RUNX1T1Q06455 604 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 CSTF3Q12996 717 aaKnown RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 DAB2IPQ5VWQ8 1189 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 PLEKHA8Q96JA3 519 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 ELP3Q9H9T3 547 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 MYOZ2Q9NPC6 264 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 SCN3BQ9NY72 215 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 ENOPH1Q9UHY7 261 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 TTC7AQ9ULT0 858 aaPredicted RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 PCDHB7Q9Y5E2 793 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 CCL15-CCL14A0A0B4J2E2 113 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 HEATR9A2RTY3 570 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 DCDC2CA8MYV0 355 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 RNASEH1O60930 286 aaKnown RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 BMP10O95393 424 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 ZNF157P51786 506 aaPredicted RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 CCL15Q16663 113 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 FKBP1CQ5VVH2 108 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 COL23A1Q86Y22 540 aaPredicted RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 CERKQ8TCT0 537 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 NR1H4Q96RI1 486 aaPredicted RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 ERP44Q9BS26 406 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 LATS2Q9NRM7 1088 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 H2AFY2Q9P0M6 372 aaPredicted RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 SOX13Q9UN79 622 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 MAGED2Q9UNF1 606 aaPredicted RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 DOLKQ9UPQ8 538 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 SLC4A7Q9Y6M7 1214 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 CNTNAP5Q8WYK1 1306 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 GLRA3O75311 464 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 LRG1P02750 347 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 TKTP29401 623 aaKnown RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 PTPAQ15257 358 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 ACAD10Q6JQN1 1059 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 ITIH5Q86UX2 942 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 TERB1Q8NA31 727 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 MRPS31Q92665 395 aaKnown RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 HPDLQ96IR7 371 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 ZDHHC15Q96MV8 337 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 MCCC1Q96RQ3 725 aaPredicted RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 DCDC2Q9UHG0 476 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 DBR1Q9UK59 544 aaKnown RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 RIMBP3CA6NJZ7 1639 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 RIMBP3BA6NNM3 1639 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 RIMBP3Q9UFD9 1639 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 SALL1Q9NSC2 1324 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 FRMD3A2A2Y4 597 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 CXCL11O14625 94 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 ASMTLO95671 621 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 APRTP07741 180 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 RAP1GDS1P52306 607 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 KCNK10P57789 538 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 DEFA1P59665 94 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 DEFA3P59666 94 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 SNAP25P60880 206 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 ZNF177Q13360 481 aaPredicted RBP11.18□□□□□ -0.62
ACTN1-216ENST00000556083 PHKG1Q16816 387 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 ZBTB41Q5SVQ8 909 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 KLHDC7AQ5VTJ3 777 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 IL31Q6EBC2 164 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 RGS9BPQ6ZS82 235 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 LZTR1Q8N653 840 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 VCPIP1Q96JH7 1222 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 TSPAN18Q96SJ8 248 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 SEPT3Q9UH03 358 aa11.18□□□□□ -0.62
ACTN1-216ENST00000556083 ABCA9Q8IUA7 1624 aa11.17□□□□□ -0.62
ACTN1-216ENST00000556083 DYTNA2CJ06 578 aa11.17□□□□□ -0.62
ACTN1-216ENST00000556083 OPLAHO14841 1288 aa11.17□□□□□ -0.62
ACTN1-216ENST00000556083 ATP9BO43861 1147 aa11.17□□□□□ -0.62
ACTN1-216ENST00000556083 RBP3P10745 1247 aa11.17□□□□□ -0.62
ACTN1-216ENST00000556083 BCAT1P54687 386 aa11.17□□□□□ -0.62
ACTN1-216ENST00000556083 MYL6P60660 151 aa11.17□□□□□ -0.62
ACTN1-216ENST00000556083 PLA2G4FQ68DD2 849 aa11.17□□□□□ -0.62
ACTN1-216ENST00000556083 SEPT8Q92599 483 aa11.17□□□□□ -0.62
ACTN1-216ENST00000556083 ANKS1AQ92625 1134 aa11.17□□□□□ -0.62
ACTN1-216ENST00000556083 SIKE1Q9BRV8 207 aa11.17□□□□□ -0.62
ACTN1-216ENST00000556083 MUC3BQ9H195 1237 aa11.17□□□□□ -0.62
ACTN1-216ENST00000556083 RMND5AQ9H871 391 aa11.17□□□□□ -0.62
ACTN1-216ENST00000556083 JMJD4Q9H9V9 463 aa11.17□□□□□ -0.62
ACTN1-216ENST00000556083 WDR41Q9HAD4 459 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms