RNA–Protein interactions for RNA: ENST00000554028.3

TMEM55B-205, human

TSL 2

Gene TMEM55B, Length 1,118 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM55B-205	ENST00000554028	DDX43	Q9NXZ2	648 aa	Known RBP	11.13	□□□□□ -0.63
TMEM55B-205	ENST00000554028	HESX1	Q9UBX0	185 aa		11.13	□□□□□ -0.63
TMEM55B-205	ENST00000554028	DNAJB4	Q9UDY4	337 aa		11.13	□□□□□ -0.63
TMEM55B-205	ENST00000554028	NAGPA	Q9UK23	515 aa		11.13	□□□□□ -0.63
TMEM55B-205	ENST00000554028	NOCT	Q9UK39	431 aa	Known RBP	11.13	□□□□□ -0.63
TMEM55B-205	ENST00000554028	ADAM28	Q9UKQ2	775 aa		11.13	□□□□□ -0.63
TMEM55B-205	ENST00000554028	STXBP5L	Q9Y2K9	1186 aa		11.13	□□□□□ -0.63
TMEM55B-205	ENST00000554028	PPP2R2C	Q9Y2T4	447 aa		11.13	□□□□□ -0.63
TMEM55B-205	ENST00000554028	PCDHA13	Q9Y5I0	950 aa		11.13	□□□□□ -0.63
TMEM55B-205	ENST00000554028	RALGAPA2	Q2PPJ7	1873 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	SF3B1	O75533	1304 aa	Known RBP eCLIP	11.12	□□□□□ -0.63	4e-7	■■■■■ 133.7
TMEM55B-205	ENST00000554028	DDX3X	O00571	662 aa	Known RBP eCLIP	11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	SYN3	O14994	580 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	KRT86	O43790	486 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	RTN2	O75298	545 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	GJB5	O95377	273 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	LSM8	O95777	96 aa	Known RBP	11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	CYP11A1	P05108	521 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	H2AFZ	P0C0S5	128 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	GZMA	P12544	262 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	ATP2A2	P16615	1042 aa	Known RBP	11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	BRD2	P25440	801 aa	Known RBP	11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	BRCC3	P46736	316 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	SLC11A1	P49279	550 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	SNX16	P57768	344 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	CYP27A1	Q02318	531 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	YWHAH	Q04917	246 aa	Predicted RBP	11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	MAPRE1	Q15691	268 aa	Known RBP	11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	CNGA2	Q16280	664 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	OVOS1	Q6IE37	1185 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	H2AFV	Q71UI9	128 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	ACOT1	Q86TX2	421 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	CCAR2	Q8N163	923 aa	Known RBP	11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	CRYBG2	Q8N1P7	616 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	FIBCD1	Q8N539	461 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	SLC4A11	Q8NBS3	891 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	MSANTD4	Q8NCY6	345 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	C3orf58	Q8NDZ4	430 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	SLC30A5	Q8TAD4	765 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	WHAMM	Q8TF30	809 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	SLC20A1	Q8WUM9	679 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	KBTBD7	Q8WVZ9	684 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	ZNF689	Q96CS4	500 aa	Predicted RBP	11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	NOX5	Q96PH1	765 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	RAD9A	Q99638	391 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	OXCT2	Q9BYC2	517 aa	Predicted RBP	11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	ELOVL4	Q9GZR5	314 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	TRMT1	Q9NXH9	659 aa	Known RBP	11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	STK39	Q9UEW8	545 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	CDH9	Q9ULB4	789 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	INTU	Q9ULD6	942 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	PCDHB12	Q9Y5F1	795 aa		11.12	□□□□□ -0.63
TMEM55B-205	ENST00000554028	TMCO5B	A8MYB1	307 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028		H7C4K7	107 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028		I3L4J1	428 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	GABRD	O14764	452 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	CHRNB2	P17787	502 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	PTPN1	P18031	435 aa	Known RBP	11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	PPM1A	P35813	382 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	NSF	P46459	744 aa	Known RBP	11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	VAV2	P52735	878 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	EPHB4	P54760	987 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	TSPY1	Q01534	308 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	FMO1	Q01740	532 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	KRT17	Q04695	432 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	IFI16	Q16666	785 aa	Known RBP	11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	FAM171A1	Q5VUB5	890 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	ACAD10	Q6JQN1	1059 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	KIAA1841	Q6NSI8	718 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	KCNT2	Q6UVM3	1135 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	CEP57	Q86XR8	500 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	HERC6	Q8IVU3	1022 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	ACRBP	Q8NEB7	543 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	LNX1	Q8TBB1	728 aa	Predicted RBP	11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	DDX1	Q92499	740 aa	Known RBP	11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	CYFIP2	Q96F07	1278 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	TRIM11	Q96F44	468 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	TMEM169	Q96HH4	297 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	SYT15	Q9BQS2	421 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	ACBD6	Q9BR61	282 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	SYT11	Q9BT88	431 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	MED10	Q9BTT4	135 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	MIS12	Q9H081	205 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	LHX5	Q9H2C1	402 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	ACP6	Q9NPH0	428 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	KCND1	Q9NSA2	647 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	SPG21	Q9NZD8	308 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	PCDHGC3	Q9UN70	934 aa		11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	TIMM13	Q9Y5L4	95 aa	Predicted RBP	11.11	□□□□□ -0.63
TMEM55B-205	ENST00000554028	ATP8B3	O60423	1300 aa		11.1	□□□□□ -0.63
TMEM55B-205	ENST00000554028	ANK1	P16157	1881 aa		11.1	□□□□□ -0.63
TMEM55B-205	ENST00000554028	DNAH12	Q6ZR08	3092 aa		11.1	□□□□□ -0.63
TMEM55B-205	ENST00000554028	NT5C1B-RDH14	C9J2C7	533 aa		11.1	□□□□□ -0.63
TMEM55B-205	ENST00000554028	TLL1	O43897	1013 aa		11.1	□□□□□ -0.63
TMEM55B-205	ENST00000554028	FTL	P02792	175 aa	Predicted RBP	11.1	□□□□□ -0.63
TMEM55B-205	ENST00000554028	TUBB4A	P04350	444 aa		11.1	□□□□□ -0.63
TMEM55B-205	ENST00000554028	LMO2	P25791	158 aa		11.1	□□□□□ -0.63
TMEM55B-205	ENST00000554028	NAP1L1	P55209	391 aa	Known RBP	11.1	□□□□□ -0.63
TMEM55B-205	ENST00000554028	ORC1	Q13415	861 aa		11.1	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms