RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 LRMPQ12912 555 aa17.36■□□□□ 0.37
CHMP1A-209ENST00000550872 MAN2A1Q16706 1144 aa17.36■□□□□ 0.37
CHMP1A-209ENST00000550872 LIN9Q5TKA1 542 aa17.36■□□□□ 0.37
CHMP1A-209ENST00000550872 SYCE2Q6PIF2 218 aa17.36■□□□□ 0.37
CHMP1A-209ENST00000550872 RNF19BQ6ZMZ0 732 aa17.36■□□□□ 0.37
CHMP1A-209ENST00000550872 DCP1BQ8IZD4 617 aaKnown RBP17.36■□□□□ 0.37
CHMP1A-209ENST00000550872 MSLNLQ96KJ4 702 aa17.36■□□□□ 0.37
CHMP1A-209ENST00000550872 PGLYRP2Q96PD5 576 aa17.36■□□□□ 0.37
CHMP1A-209ENST00000550872 ACBD6Q9BR61 282 aa17.36■□□□□ 0.37
CHMP1A-209ENST00000550872 NIF3L1Q9GZT8 377 aa17.36■□□□□ 0.37
CHMP1A-209ENST00000550872 MTCL1Q9Y4B5 1905 aaKnown RBP17.36■□□□□ 0.37
CHMP1A-209ENST00000550872 TSC2P49815 1807 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 XIRP2A4UGR9 3374 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 SMTNL1A8MU46 457 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 A8MXQ7 604 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 HCRTO43612 131 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 WEE2P0C1S8 567 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 ATF2P15336 505 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 LMO2P25791 158 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 ASPAP45381 313 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 AAK1Q2M2I8 961 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 LEXMQ3ZCV2 418 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 SLC39A12Q504Y0 691 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 TCP11X2Q5H9J9 407 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 RARS2Q5T160 578 aaKnown RBP17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 CDKAL1Q5VV42 579 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 CCDC149Q6ZUS6 474 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 LRRTM3Q86VH5 581 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 EHBP1Q8NDI1 1231 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 TATDN2Q93075 761 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 ASB2Q96Q27 587 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 BPIFA3Q9BQP9 254 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 TUBGCP2Q9BSJ2 902 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 SDCBP2Q9H190 292 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 SFXN1Q9H9B4 322 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 CYP4F11Q9HBI6 524 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 CDH9Q9ULB4 789 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 BDP1A6H8Y1 2624 aa17.35■□□□□ 0.37
CHMP1A-209ENST00000550872 TNFRSF10AO00220 468 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 PES1O00541 588 aaKnown RBP17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 PRRG1O14668 218 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 NCOR1O75376 2440 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 RFPL2O75678 378 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 ZMYND10O75800 440 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 SEC24AO95486 1093 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 C8AP07357 584 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 CDK11BP21127 795 aaKnown RBP17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 CDR1P51861 262 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 MRPS5P82675 430 aaKnown RBP17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 NCAPHQ15003 741 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 UVSSAQ2YD98 709 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 INTS6LQ5JSJ4 861 aaKnown RBP17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 PPM1LQ5SGD2 360 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 TMC5Q6UXY8 1006 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 ATAD1Q8NBU5 361 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 SLC7A14Q8TBB6 771 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 NT5C1BQ96P26 610 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 SYT15Q9BQS2 421 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 BCO2Q9BYV7 579 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 S1PR5Q9H228 398 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 NDST4Q9H3R1 872 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 CYP3A43Q9HB55 503 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 MAFFQ9ULX9 164 aa17.34■□□□□ 0.37
CHMP1A-209ENST00000550872 CCDC195A0A1B0GUA6 201 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 MTMR11A4FU01 709 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 BECN2A8MW95 431 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 ATP2C2O75185 946 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 PSMC1P62191 440 aaKnown RBP17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 ITIH3Q06033 890 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 SMARCB1Q12824 385 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 VWA3BQ502W6 1294 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 CES5AQ6NT32 575 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 DHX40Q8IX18 779 aaKnown RBP17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 TCEAL8Q8IYN2 117 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 SMRP1Q8NCR6 262 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 ANKRD20A12PQ8NF67 263 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 LMO3Q8TAP4 145 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 FAXDC2Q96IV6 333 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 CRACR2AQ9BSW2 395 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 TMLHEQ9NVH6 421 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 ZDHHC7Q9NXF8 308 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 TAB2Q9NYJ8 693 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 GTF3C4Q9UKN8 822 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 NME7Q9Y5B8 376 aa17.33■□□□□ 0.36
CHMP1A-209ENST00000550872 MYBPHLA2RUH7 354 aa17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 VNN2O95498 520 aa17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 TPM2P07951 284 aa17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 HNRNPA1P09651 372 aaKnown RBP eCLIP17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 CD58P19256 250 aa17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 DUSP4Q13115 394 aa17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 SMAD4Q13485 552 aaKnown RBP17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 KRT31Q15323 416 aa17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 NFE2Q16621 373 aaPredicted RBP17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 MIIPQ5JXC2 388 aa17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 GBP6Q6ZN66 633 aa17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 RTL10Q7L3V2 364 aa17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 CMASQ8NFW8 434 aaPredicted RBP17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 INTS2Q9H0H0 1204 aaKnown RBP17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 VPS16Q9H269 839 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms