RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 TNK2Q07912 1038 aa11.46□□□□□ -0.57
VPS29-208ENST00000550267 ZNF568Q3ZCX4 644 aa11.46□□□□□ -0.57
VPS29-208ENST00000550267 UNQ6494/PRO21346Q6UXR6 183 aa11.46□□□□□ -0.57
VPS29-208ENST00000550267 APBB1IPQ7Z5R6 666 aaPredicted RBP11.46□□□□□ -0.57
VPS29-208ENST00000550267 IFT74Q96LB3 600 aa11.46□□□□□ -0.57
VPS29-208ENST00000550267 TBC1D32Q96NH3 1257 aa11.46□□□□□ -0.57
VPS29-208ENST00000550267 PGLYRP2Q96PD5 576 aa11.46□□□□□ -0.57
VPS29-208ENST00000550267 MKNK1Q9BUB5 465 aa11.46□□□□□ -0.57
VPS29-208ENST00000550267 DNAJC25Q9H1X3 360 aa11.46□□□□□ -0.57
VPS29-208ENST00000550267 CRISPLD1Q9H336 500 aa11.46□□□□□ -0.57
VPS29-208ENST00000550267 BRMS1Q9HCU9 246 aa11.46□□□□□ -0.57
VPS29-208ENST00000550267 ORC3Q9UBD5 711 aaPredicted RBP11.46□□□□□ -0.57
VPS29-208ENST00000550267 MAFFQ9ULX9 164 aa11.46□□□□□ -0.57
VPS29-208ENST00000550267 CHD6Q8TD26 2715 aa11.46□□□□□ -0.58
VPS29-208ENST00000550267 BTBD18B2RXH4 712 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 K7ERI5 159 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 GIPC1O14908 333 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 MEFVO15553 781 aaPredicted RBP11.45□□□□□ -0.58
VPS29-208ENST00000550267 REC8O95072 547 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 FDPSP14324 419 aaKnown RBP11.45□□□□□ -0.58
VPS29-208ENST00000550267 KCNE1P15382 129 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 RPL9P32969 192 aaKnown RBP11.45□□□□□ -0.58
VPS29-208ENST00000550267 MPLP40238 635 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 QPCTQ16769 361 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 ARHGAP29Q52LW3 1261 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 RNF43Q68DV7 783 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 TCEAL6Q6IPX3 200 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 HAUS6Q7Z4H7 955 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 TMEM130Q8N3G9 435 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 SYNPOQ8N3V7 929 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 APPL2Q8NEU8 664 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 BEST2Q8NFU1 509 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 TCEAL3Q969E4 200 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 ACO2Q99798 780 aaKnown RBP11.45□□□□□ -0.58
VPS29-208ENST00000550267 POLR3CQ9BUI4 534 aaPredicted RBP11.45□□□□□ -0.58
VPS29-208ENST00000550267 TM6SF1Q9BZW5 370 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 PTPRHQ9HD43 1115 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 VPS45Q9NRW7 570 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 POLR3BQ9NW08 1133 aaPredicted RBP11.45□□□□□ -0.58
VPS29-208ENST00000550267 CNTN3Q9P232 1028 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 TPCN1Q9ULQ1 816 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 PCDHGA5Q9Y5G8 931 aa11.45□□□□□ -0.58
VPS29-208ENST00000550267 TIMM13Q9Y5L4 95 aaPredicted RBP11.45□□□□□ -0.58
VPS29-208ENST00000550267 PHLPP2Q6ZVD8 1323 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 PFKFB2O60825 505 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 PRAMEF12O95522 483 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 HARSP12081 509 aaKnown RBP11.44□□□□□ -0.58
VPS29-208ENST00000550267 SPINK2P20155 84 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 RPA1P27694 616 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 MARCKSP29966 332 aaPredicted RBP11.44□□□□□ -0.58
VPS29-208ENST00000550267 MCM7P33993 719 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 NOVA1P51513 510 aaKnown RBP11.44□□□□□ -0.58
VPS29-208ENST00000550267 EPHB3P54753 998 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 DUSP4Q13115 394 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 PLD1Q13393 1074 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 GPR158Q5T848 1215 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 CENPQQ7L2Z9 268 aaPredicted RBP11.44□□□□□ -0.58
VPS29-208ENST00000550267 DIS3L2Q8IYB7 885 aaKnown RBP11.44□□□□□ -0.58
VPS29-208ENST00000550267 WASF1Q92558 559 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 TSC1Q92574 1164 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 KIFAP3Q92845 792 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 ACAP3Q96P50 834 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 EDEM2Q9BV94 578 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 TARS2Q9BW92 718 aaKnown RBP11.44□□□□□ -0.58
VPS29-208ENST00000550267 ATXN3LQ9H3M9 355 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 TUBGCP4Q9UGJ1 667 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 DNMT3LQ9UJW3 386 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 SLC8A2Q9UPR5 921 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 GREB1Q4ZG55 1949 aa11.44□□□□□ -0.58
VPS29-208ENST00000550267 CCDC163A0A0D9SF12 145 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 CCDC169A6NNP5 214 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 ABLIM1O14639 778 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 SOAT2O75908 522 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 TOP3BO95985 862 aaKnown RBP11.43□□□□□ -0.58
VPS29-208ENST00000550267 MCF2P10911 925 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 GABRR2P28476 465 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 ALDH1A3P47895 512 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 PEX3P56589 373 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 CYP4F8P98187 520 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 YWHAHQ04917 246 aaPredicted RBP11.43□□□□□ -0.58
VPS29-208ENST00000550267 ZNF252P-AS1Q0IIN9 211 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 ACAP1Q15027 740 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 ECM1Q16610 540 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 PLK5Q496M5 336 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 SEZ6Q53EL9 994 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 FSTL4Q6MZW2 842 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 GAREM2Q75VX8 874 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 VASH1Q7L8A9 365 aaPredicted RBP11.43□□□□□ -0.58
VPS29-208ENST00000550267 TAS1R3Q7RTX0 852 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 TTC9BQ8N6N2 239 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 KDF1Q8NAX2 398 aaPredicted RBP11.43□□□□□ -0.58
VPS29-208ENST00000550267 BPIFB1Q8TDL5 484 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 ZC3H10Q96K80 434 aaKnown RBP11.43□□□□□ -0.58
VPS29-208ENST00000550267 TMEM209Q96SK2 561 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 TCHPQ9BT92 498 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 MRPL4Q9BYD3 311 aaKnown RBP11.43□□□□□ -0.58
VPS29-208ENST00000550267 BHMT2Q9H2M3 363 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 OBP2AQ9NY56 170 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 RALGAPA1Q6GYQ0 2036 aa11.43□□□□□ -0.58
VPS29-208ENST00000550267 C4orf47A7E2U8 309 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms