RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 MGAT3Q09327 533 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 ADAT2Q7Z6V5 191 aaKnown RBP15.2■□□□□ 0.02
VPS33A-209ENST00000544349 CPNE8Q86YQ8 564 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 MCOLN2Q8IZK6 566 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 SMG8Q8ND04 991 aaKnown RBP15.2■□□□□ 0.02
VPS33A-209ENST00000544349 ZNF296Q8WUU4 475 aaPredicted RBP15.2■□□□□ 0.02
VPS33A-209ENST00000544349 CAPS2Q9BXY5 557 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 SENP6Q9GZR1 1112 aaPredicted RBP15.2■□□□□ 0.02
VPS33A-209ENST00000544349 RSPH14Q9UHP6 348 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 RRP15Q9Y3B9 282 aaKnown RBP15.2■□□□□ 0.02
VPS33A-209ENST00000544349 IPPQ9Y573 584 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 CCDC188H7C350 402 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 CTSHP09668 335 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 P4HA1P13674 534 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 SSTR3P32745 418 aaPredicted RBP15.2■□□□□ 0.02
VPS33A-209ENST00000544349 HSD17B3P37058 310 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 NSFP46459 744 aaKnown RBP15.2■□□□□ 0.02
VPS33A-209ENST00000544349 ATP1A2P50993 1020 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 GNGT1P63211 74 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 NOMO3P69849 1222 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 ITGA7Q13683 1181 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 ARHGEF6Q15052 776 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 XKR4Q5GH76 650 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 PASD1Q8IV76 773 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 BEST2Q8NFU1 509 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 OR2W6PQ8NHA6 318 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 RNPC3Q96LT9 517 aaKnown RBP15.2■□□□□ 0.02
VPS33A-209ENST00000544349 ZSWIM1Q9BR11 485 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 NUP85Q9BW27 656 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 RNF39Q9H2S5 420 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 SMYD3Q9H7B4 428 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 CYP3A43Q9HB55 503 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 UVRAGQ9P2Y5 699 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 CNOT8Q9UFF9 292 aaKnown RBP15.2■□□□□ 0.02
VPS33A-209ENST00000544349 PARP2Q9UGN5 583 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 ST3GAL5Q9UNP4 418 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 TRIM66O15016 1216 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 INHAP05111 366 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 BRD2P25440 801 aaKnown RBP15.19■□□□□ 0.02
VPS33A-209ENST00000544349 ACLYP53396 1101 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 PDCLQ13371 301 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 CUL1Q13616 776 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 SKIDA1Q1XH10 827 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 GLRA4Q5JXX5 417 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 TWF2Q6IBS0 349 aaKnown RBP15.19■□□□□ 0.02
VPS33A-209ENST00000544349 SLAIN1Q8ND83 568 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 KRT35Q92764 455 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 DPH5Q9H2P9 285 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 SLITRK6Q9H5Y7 841 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 TUBGCP4Q9UGJ1 667 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 TMEM110-MUSTN1A8MSY1 372 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 MYBL1P10243 752 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 PRMT2P55345 433 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 SKOR1P84550 965 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 MYO1EQ12965 1108 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 C11orf63Q6NUN7 778 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 PPP1R2P3Q6NXS1 205 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 MON1BQ7L1V2 547 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 MAATS1Q7Z4T9 603 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 ZNF564Q8TBZ8 553 aaPredicted RBP15.19■□□□□ 0.02
VPS33A-209ENST00000544349 TFAP2BQ92481 460 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 C18orf25Q96B23 403 aaPredicted RBP15.19■□□□□ 0.02
VPS33A-209ENST00000544349 TRIM11Q96F44 468 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 TSPAN18Q96SJ8 248 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 HMX1Q9NP08 348 aaPredicted RBP15.19■□□□□ 0.02
VPS33A-209ENST00000544349 AVENQ9NQS1 362 aaPredicted RBP15.19■□□□□ 0.02
VPS33A-209ENST00000544349 SAGE1Q9NXZ1 904 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 KLK14Q9P0G3 267 aa15.19■□□□□ 0.02
VPS33A-209ENST00000544349 TTC7AQ9ULT0 858 aaPredicted RBP15.19■□□□□ 0.02
VPS33A-209ENST00000544349 UBQLN1Q9UMX0 589 aaKnown RBP15.19■□□□□ 0.02
VPS33A-209ENST00000544349 SCN1AP35498 2009 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 PCNTO95613 3336 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 SMIM28A0A1B0GU29 152 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 ANKRD65E5RJM6 399 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 MYO1CO00159 1063 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 EIF3HO15372 352 aaKnown RBP eCLIP15.18■□□□□ 0.02
VPS33A-209ENST00000544349 CILPO75339 1184 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 PAEPP09466 180 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 KCNE1P15382 129 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 THPOP40225 353 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 RAD23BP54727 409 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 PTPN11Q06124 597 aaPredicted RBP15.18■□□□□ 0.02
VPS33A-209ENST00000544349 NFX1Q12986 1120 aaKnown RBP15.18■□□□□ 0.02
VPS33A-209ENST00000544349 LHX8Q68G74 356 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 PHF13Q86YI8 300 aaPredicted RBP15.18■□□□□ 0.02
VPS33A-209ENST00000544349 VCPIP1Q96JH7 1222 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 FAM124BQ9H5Z6 455 aaPredicted RBP15.18■□□□□ 0.02
VPS33A-209ENST00000544349 LRRC4CQ9HCJ2 640 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 CHST12Q9NRB3 414 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 RNF19AQ9NV58 838 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 PCDHGC3Q9UN70 934 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 ALG6Q9Y672 507 aa15.18■□□□□ 0.02
VPS33A-209ENST00000544349 MOXD2PA6NHM9 499 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 H0YGN5 161 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 PPEF2O14830 753 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 RRM1P23921 792 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 GRK4P32298 578 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 PTK7Q13308 1070 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 CEP85LQ5SZL2 805 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 ARRDC4Q8NCT1 418 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms