RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 UBA7P41226 1012 aa16.69■□□□□ 0.26
RTN3-211ENST00000542238 CYP4F8P98187 520 aa16.69■□□□□ 0.26
RTN3-211ENST00000542238 TNK2Q07912 1038 aa16.69■□□□□ 0.26
RTN3-211ENST00000542238 SMARCB1Q12824 385 aa16.69■□□□□ 0.26
RTN3-211ENST00000542238 WDR44Q5JSH3 913 aa16.69■□□□□ 0.26
RTN3-211ENST00000542238 ZHX3Q9H4I2 956 aa16.69■□□□□ 0.26
RTN3-211ENST00000542238 ASB7Q9H672 318 aa16.69■□□□□ 0.26
RTN3-211ENST00000542238 CNOT1A5YKK6 2376 aaKnown RBP16.69■□□□□ 0.26
RTN3-211ENST00000542238 ANO9A1A5B4 782 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 H3BQV1 296 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 CYB561D2O14569 222 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 GDF9O60383 454 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 ATG13O75143 517 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 TBCAO75347 108 aaKnown RBP16.68■□□□□ 0.26
RTN3-211ENST00000542238 KRT37O76014 449 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 AVPR1AP37288 418 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 TAF6P49848 677 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 ZNF131P52739 623 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 IL31Q6EBC2 164 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 RASSF8Q8NHQ8 419 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 SPPL2BQ8TCT7 592 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 PYM1Q9BRP8 204 aaKnown RBP16.68■□□□□ 0.26
RTN3-211ENST00000542238 SLC46A2Q9BY10 475 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 GKN1Q9NS71 199 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 C2orf42Q9NWW7 574 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 ATG2BQ96BY7 2078 aa16.68■□□□□ 0.26
RTN3-211ENST00000542238 ATF6P18850 670 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 KCNA4P22459 653 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 ACOT2P49753 483 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 AMPD2Q01433 879 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 GRSF1Q12849 480 aaKnown RBP eCLIP16.67■□□□□ 0.26
RTN3-211ENST00000542238 BFSP1Q12934 665 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 AASDHQ4L235 1098 aaPredicted RBP16.67■□□□□ 0.26
RTN3-211ENST00000542238 ADALQ6DHV7 355 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 SLFN12LQ6IEE8 588 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 CACNA2D4Q7Z3S7 1137 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 DCP1BQ8IZD4 617 aaKnown RBP16.67■□□□□ 0.26
RTN3-211ENST00000542238 CMTM8Q8IZV2 173 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 C12orf50Q8NA57 414 aaPredicted RBP16.67■□□□□ 0.26
RTN3-211ENST00000542238 GIPC2Q8TF65 315 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 LOXL4Q96JB6 756 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 CHAMP1Q96JM3 812 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 SMG9Q9H0W8 520 aaKnown RBP16.67■□□□□ 0.26
RTN3-211ENST00000542238 IL21Q9HBE4 155 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 DPP3Q9NY33 737 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 SLC8A2Q9UPR5 921 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 C2CD2Q9Y426 696 aa16.67■□□□□ 0.26
RTN3-211ENST00000542238 CCDC163A0A0D9SF12 145 aa16.66■□□□□ 0.26
RTN3-211ENST00000542238 AXIN1O15169 862 aa16.66■□□□□ 0.26
RTN3-211ENST00000542238 EXTL3O43909 919 aa16.66■□□□□ 0.26
RTN3-211ENST00000542238 RPP40O75818 363 aaKnown RBP16.66■□□□□ 0.26
RTN3-211ENST00000542238 CCDC192P0DO97 292 aa16.66■□□□□ 0.26
RTN3-211ENST00000542238 HAPLN1P10915 354 aaPredicted RBP16.66■□□□□ 0.26
RTN3-211ENST00000542238 DDX6P26196 483 aaKnown RBP eCLIP16.66■□□□□ 0.26
RTN3-211ENST00000542238 CDR1P51861 262 aa16.66■□□□□ 0.26
RTN3-211ENST00000542238 GTF2BQ00403 316 aa16.66■□□□□ 0.26
RTN3-211ENST00000542238 RUNX3Q13761 415 aa16.66■□□□□ 0.26
RTN3-211ENST00000542238 ST3GAL2Q16842 350 aa16.66■□□□□ 0.26
RTN3-211ENST00000542238 CC2D1AQ6P1N0 951 aaPredicted RBP16.66■□□□□ 0.26
RTN3-211ENST00000542238 SLC39A4Q6P5W5 647 aa16.66■□□□□ 0.26
RTN3-211ENST00000542238 GAB3Q8WWW8 586 aa16.66■□□□□ 0.26
RTN3-211ENST00000542238 KIF2CQ99661 725 aa16.66■□□□□ 0.26
RTN3-211ENST00000542238 ARRDC1-AS1Q9H2J1 176 aa16.66■□□□□ 0.26
RTN3-211ENST00000542238 ABI2Q9NYB9 513 aaPredicted RBP16.66■□□□□ 0.26
RTN3-211ENST00000542238 AGO2Q9UKV8 859 aaKnown RBP16.66■□□□□ 0.26
RTN3-211ENST00000542238 OBSL1O75147 1896 aa16.65■□□□□ 0.26
RTN3-211ENST00000542238 NMT1P30419 496 aaKnown RBP16.65■□□□□ 0.26
RTN3-211ENST00000542238 MCM6Q14566 821 aa16.65■□□□□ 0.26
RTN3-211ENST00000542238 SV2CQ496J9 727 aa16.65■□□□□ 0.26
RTN3-211ENST00000542238 TMEM196Q5HYL7 178 aa16.65■□□□□ 0.26
RTN3-211ENST00000542238 WSCD1Q658N2 575 aa16.65■□□□□ 0.26
RTN3-211ENST00000542238 LRRTM3Q86VH5 581 aa16.65■□□□□ 0.26
RTN3-211ENST00000542238 MAB21L3Q8N8X9 362 aa16.65■□□□□ 0.26
RTN3-211ENST00000542238 EXOC4Q96A65 974 aa16.65■□□□□ 0.26
RTN3-211ENST00000542238 FAM83CQ9BQN1 747 aa16.65■□□□□ 0.26
RTN3-211ENST00000542238 CCSER1Q9C0I3 900 aa16.65■□□□□ 0.26
RTN3-211ENST00000542238 KIF9Q9HAQ2 790 aa16.65■□□□□ 0.26
RTN3-211ENST00000542238 TDP1Q9NUW8 608 aa16.65■□□□□ 0.26
RTN3-211ENST00000542238 PCDHB5Q9Y5E4 795 aa16.65■□□□□ 0.26
RTN3-211ENST00000542238 SOBPA7XYQ1 873 aa16.64■□□□□ 0.25
RTN3-211ENST00000542238 KPNA7A9QM74 516 aa16.64■□□□□ 0.25
RTN3-211ENST00000542238 ANKRD63C9JTQ0 380 aa16.64■□□□□ 0.25
RTN3-211ENST00000542238 TRDMT1O14717 391 aaKnown RBP16.64■□□□□ 0.25
RTN3-211ENST00000542238 ZNF806P0C7X5 589 aa16.64■□□□□ 0.25
RTN3-211ENST00000542238 PLCG1P19174 1290 aa16.64■□□□□ 0.25
RTN3-211ENST00000542238 PXNP49023 591 aaPredicted RBP16.64■□□□□ 0.25
RTN3-211ENST00000542238 LIMK1P53667 647 aa16.64■□□□□ 0.25
RTN3-211ENST00000542238 NLRP12P59046 1061 aa16.64■□□□□ 0.25
RTN3-211ENST00000542238 TSPY1Q01534 308 aa16.64■□□□□ 0.25
RTN3-211ENST00000542238 POU5F1Q01860 360 aaKnown RBP16.64■□□□□ 0.25
RTN3-211ENST00000542238 MRPS31Q92665 395 aaKnown RBP16.64■□□□□ 0.25
RTN3-211ENST00000542238 RAD54LQ92698 747 aa16.64■□□□□ 0.25
RTN3-211ENST00000542238 ZNF560Q96MR9 790 aa16.64■□□□□ 0.25
RTN3-211ENST00000542238 EBF3Q9H4W6 596 aa16.64■□□□□ 0.25
RTN3-211ENST00000542238 BLOC1S4Q9NUP1 217 aa16.64■□□□□ 0.25
RTN3-211ENST00000542238 AKAP3O75969 853 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 EPN2O95208 641 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 IL18RAPO95256 599 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 BMP15O95972 392 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 F11P03951 625 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms