RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 IMPDH2P12268 514 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 PTGER2P43116 358 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 GTF2A2P52657 109 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 SMTNL2Q2TAL5 461 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 SAMD7Q7Z3H4 446 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 CHP1Q99653 195 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 C16orf96A6NNT2 1141 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 BRD2P25440 801 aaKnown RBP18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 STK4Q13043 487 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 DPF2Q92785 391 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 DPEP1P16444 411 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 CNGA3Q16281 694 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 TTC39BQ5VTQ0 682 aaPredicted RBP18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 L3MBTL3Q96JM7 780 aaPredicted RBP18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 TAAR1Q96RJ0 339 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 MRGBPQ9NV56 204 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 ITIH6Q6UXX5 1313 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 STX7O15400 261 aaKnown RBP18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 EIF2B5Q13144 721 aaKnown RBP18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 BBS7Q8IWZ6 715 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 KCTD17Q8N5Z5 321 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 TARS2Q9BW92 718 aaKnown RBP18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 FOXP3Q9BZS1 431 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 DPP3Q9NY33 737 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 LAMC1P11047 1609 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 H2AFYO75367 372 aaKnown RBP18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 SNRPAP09012 282 aaKnown RBP18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 COMTP21964 271 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 RPA1P27694 616 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 KCNK10P57789 538 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 FAM118BQ9BPY3 351 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 PI4K2AQ9BTU6 479 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 GOLPH3Q9H4A6 298 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 MYO1CO00159 1063 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 SLC9A1P19634 815 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 LINC00523Q86TU6 105 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 HORMAD1Q86X24 394 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 FEZF2Q8TBJ5 459 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 ZNF512BQ96KM6 892 aaPredicted RBP18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 MKNK1Q9BUB5 465 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 HPS4Q9NQG7 708 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 VPS9D1Q9Y2B5 631 aa18.94■□□□□ 0.62
SFSWAP-203ENST00000535236 GPR182O15218 404 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 UBE3AQ05086 875 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 CYP4A22Q5TCH4 519 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 UGT3A1Q6NUS8 523 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 WDR47O94967 919 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 CYP2C8P10632 490 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 CHN1P15882 459 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 CENPAP49450 140 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 POU4F1Q01851 419 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 SFSWAPQ12872 951 aaKnown RBP18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 LRIG3Q6UXM1 1119 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 KCNK16Q96T55 309 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 DNAJC7Q99615 494 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 YIPF3Q9GZM5 350 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 STN1Q9H668 368 aaKnown RBP18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 KLK14Q9P0G3 267 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 SPASTQ9UBP0 616 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 GAS2O43903 313 aaKnown RBP18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 ANXA9O76027 345 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 DDHD2O94830 711 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 TMEM253P0C7T8 217 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 EPHB2P29323 1055 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 FMR1Q06787 632 aaKnown RBP eCLIP18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 POLD3Q15054 466 aaPredicted RBP18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 DEPDC1Q5TB30 811 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 C3orf62Q6ZUJ4 267 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 UCMAQ8WVF2 138 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 GID8Q9NWU2 228 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 SLC25A13Q9UJS0 675 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 DBR1Q9UK59 544 aaKnown RBP18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 SPATA31A6Q5VVP1 1343 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 ATMINO43313 823 aaPredicted RBP18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 CENPCQ03188 943 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 TTLL9Q3SXZ7 439 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 BHMTQ93088 406 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 ZNF669Q96BR6 464 aaPredicted RBP18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 AGPAT5Q9NUQ2 364 aa18.93■□□□□ 0.62
SFSWAP-203ENST00000535236 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.93■□□□□ 0.621e-6■□□□□ 8.4
SFSWAP-203ENST00000535236 PGK2P07205 417 aa18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 CARSP49589 748 aaKnown RBP18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 CSE1LP55060 971 aaKnown RBP18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 NPEPPSP55786 919 aa18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 AGBL3Q8NEM8 1001 aa18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 USP13Q92995 863 aaPredicted RBP18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 CMTM5Q96DZ9 223 aa18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 WDR24Q96S15 920 aa18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 FAM47DPA6NHR8 397 aa18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 KLHL2O95198 593 aa18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 RBP3P10745 1247 aa18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 VCAM1P19320 739 aa18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 ACTN3Q08043 901 aaPredicted RBP18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 SGSM3Q96HU1 749 aa18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 WDCPQ9H6R7 721 aa18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 GRID1Q9ULK0 1009 aa18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 EVPLLA8MZ36 301 aa18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 SOAT2O75908 522 aa18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 ALOX15P16050 662 aaPredicted RBP18.92■□□□□ 0.62
SFSWAP-203ENST00000535236 E4F1Q66K89 784 aaPredicted RBP18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms