RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 HLA-DRAP01903 254 aa21.28■■□□□ 1
CPSF1-209ENST00000532725 ACAT1P24752 427 aaKnown RBP21.28■■□□□ 1
CPSF1-209ENST00000532725 FRMD5Q7Z6J6 570 aa21.28■■□□□ 1
CPSF1-209ENST00000532725 TAS1R2Q8TE23 839 aa21.28■■□□□ 1
CPSF1-209ENST00000532725 TAF4BQ92750 862 aa21.28■■□□□ 1
CPSF1-209ENST00000532725 PKMYT1Q99640 499 aa21.28■■□□□ 1
CPSF1-209ENST00000532725 TMLHEQ9NVH6 421 aa21.28■■□□□ 1
CPSF1-209ENST00000532725 NXF1Q9UBU9 619 aaKnown RBP21.28■■□□□ 1
CPSF1-209ENST00000532725 ARMCX3Q9UH62 379 aaPredicted RBP21.28■■□□□ 1
CPSF1-209ENST00000532725 POLIQ9UNA4 740 aa21.28■■□□□ 1
CPSF1-209ENST00000532725 NR2E1Q9Y466 385 aa21.28■■□□□ 1
CPSF1-209ENST00000532725 C2orf16Q68DN1 1984 aa21.28■■□□□ 1
CPSF1-209ENST00000532725 C2CD4DB7Z1M9 353 aa21.27■■□□□ 1
CPSF1-209ENST00000532725 ASS1P00966 412 aaKnown RBP21.27■■□□□ 1
CPSF1-209ENST00000532725 LRG1P02750 347 aa21.27■■□□□ 1
CPSF1-209ENST00000532725 GNL1P36915 607 aaPredicted RBP21.27■■□□□ 1
CPSF1-209ENST00000532725 TNNC1P63316 161 aa21.27■■□□□ 1
CPSF1-209ENST00000532725 NTHL1P78549 312 aa21.27■■□□□ 1
CPSF1-209ENST00000532725 TSPY1Q01534 308 aa21.27■■□□□ 1
CPSF1-209ENST00000532725 ZNF699Q32M78 642 aa21.27■■□□□ 1
CPSF1-209ENST00000532725 ZNF667Q5HYK9 610 aa21.27■■□□□ 1
CPSF1-209ENST00000532725 INTS6LQ5JSJ4 861 aaKnown RBP21.27■■□□□ 1
CPSF1-209ENST00000532725 KRT39Q6A163 491 aa21.27■■□□□ 1
CPSF1-209ENST00000532725 FAM171BQ6P995 826 aa21.27■■□□□ 1
CPSF1-209ENST00000532725 C2orf15Q8WU43 125 aaKnown RBP21.27■■□□□ 1
CPSF1-209ENST00000532725 SRRTQ9BXP5 876 aaKnown RBP21.27■■□□□ 1
CPSF1-209ENST00000532725 MMRN2Q9H8L6 949 aa21.27■■□□□ 1
CPSF1-209ENST00000532725 METTL14Q9HCE5 456 aaKnown RBP21.27■■□□□ 1
CPSF1-209ENST00000532725 HCFC1R1Q9NWW0 138 aa21.27■■□□□ 1
CPSF1-209ENST00000532725 CEP72Q9P209 647 aa21.27■■□□□ 1
CPSF1-209ENST00000532725 RWDD2AQ9UIY3 292 aa21.27■■□□□ 1
CPSF1-209ENST00000532725 NME7Q9Y5B8 376 aa21.27■■□□□ 1
CPSF1-209ENST00000532725 CLUHO75153 1309 aa21.27■□□□□ 0.99
CPSF1-209ENST00000532725 STX10O60499 249 aa21.26■□□□□ 0.99
CPSF1-209ENST00000532725 N4BP1O75113 896 aaKnown RBP21.26■□□□□ 0.99
CPSF1-209ENST00000532725 LRRN2O75325 713 aa21.26■□□□□ 0.99
CPSF1-209ENST00000532725 PTPN2P17706 415 aa21.26■□□□□ 0.99
CPSF1-209ENST00000532725 SP100P23497 879 aaPredicted RBP21.26■□□□□ 0.99
CPSF1-209ENST00000532725 PCSK1P29120 753 aa21.26■□□□□ 0.99
CPSF1-209ENST00000532725 CDR1P51861 262 aa21.26■□□□□ 0.99
CPSF1-209ENST00000532725 NLRP12P59046 1061 aa21.26■□□□□ 0.99
CPSF1-209ENST00000532725 TWF1Q12792 350 aa21.26■□□□□ 0.99
CPSF1-209ENST00000532725 RBM43Q6ZSC3 357 aaKnown RBP21.26■□□□□ 0.99
CPSF1-209ENST00000532725 TTC9BQ8N6N2 239 aa21.26■□□□□ 0.99
CPSF1-209ENST00000532725 KHSRPQ92945 711 aaKnown RBP eCLIP21.26■□□□□ 0.99
CPSF1-209ENST00000532725 SLC35C1Q96A29 364 aa21.26■□□□□ 0.99
CPSF1-209ENST00000532725 GTF3C4Q9UKN8 822 aa21.26■□□□□ 0.99
CPSF1-209ENST00000532725 MYBPHLA2RUH7 354 aa21.25■□□□□ 0.99
CPSF1-209ENST00000532725 ATP2C2O75185 946 aa21.25■□□□□ 0.99
CPSF1-209ENST00000532725 PDGFRBP09619 1106 aa21.25■□□□□ 0.99
CPSF1-209ENST00000532725 PIK3CAP42336 1068 aa21.25■□□□□ 0.99
CPSF1-209ENST00000532725 TUFMP49411 452 aaKnown RBP21.25■□□□□ 0.99
CPSF1-209ENST00000532725 CDH8P55286 799 aa21.25■□□□□ 0.99
CPSF1-209ENST00000532725 NFE2Q16621 373 aaPredicted RBP21.25■□□□□ 0.99
CPSF1-209ENST00000532725 SPOPLQ6IQ16 392 aa21.25■□□□□ 0.99
CPSF1-209ENST00000532725 OTOP3Q7RTS5 596 aa21.25■□□□□ 0.99
CPSF1-209ENST00000532725 RNF135Q8IUD6 432 aa21.25■□□□□ 0.99
CPSF1-209ENST00000532725 ZDHHC14Q8IZN3 488 aa21.25■□□□□ 0.99
CPSF1-209ENST00000532725 SPPL2BQ8TCT7 592 aa21.25■□□□□ 0.99
CPSF1-209ENST00000532725 SEMA4DQ92854 862 aa21.25■□□□□ 0.99
CPSF1-209ENST00000532725 PI4K2AQ9BTU6 479 aa21.25■□□□□ 0.99
CPSF1-209ENST00000532725 SNX25Q9H3E2 840 aa21.25■□□□□ 0.99
CPSF1-209ENST00000532725 AVENQ9NQS1 362 aaPredicted RBP21.25■□□□□ 0.99
CPSF1-209ENST00000532725 CDH9Q9ULB4 789 aa21.25■□□□□ 0.99
CPSF1-209ENST00000532725 YIPF1Q9Y548 306 aa21.25■□□□□ 0.99
CPSF1-209ENST00000532725 MBD3O95983 291 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 HAPLN1P10915 354 aaPredicted RBP21.24■□□□□ 0.99
CPSF1-209ENST00000532725 FSHRP23945 695 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 DPCR1Q3MIW9 517 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 CBWD6Q4V339 395 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 DCAF17Q5H9S7 520 aaPredicted RBP21.24■□□□□ 0.99
CPSF1-209ENST00000532725 CBWD3Q5JTY5 395 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 CBWD5Q5RIA9 395 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 TCERG1LQ5VWI1 586 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 PLCD3Q8N3E9 789 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 OR6B3Q8NGW1 331 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 ZNF512Q96ME7 567 aaPredicted RBP21.24■□□□□ 0.99
CPSF1-209ENST00000532725 MYADMQ96S97 322 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 SDCBP2Q9H190 292 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 DNAJC25Q9H1X3 360 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 SMYD3Q9H7B4 428 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 APOBEC3GQ9HC16 384 aaKnown RBP21.24■□□□□ 0.99
CPSF1-209ENST00000532725 CRTAC1Q9NQ79 661 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.24■□□□□ 0.99
CPSF1-209ENST00000532725 COQ4Q9Y3A0 265 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 PCDHB5Q9Y5E4 795 aa21.24■□□□□ 0.99
CPSF1-209ENST00000532725 NOTCH4Q99466 2003 aa21.23■□□□□ 0.99
CPSF1-209ENST00000532725 SOAT2O75908 522 aa21.23■□□□□ 0.99
CPSF1-209ENST00000532725 GNA14O95837 355 aa21.23■□□□□ 0.99
CPSF1-209ENST00000532725 RHOP08100 348 aa21.23■□□□□ 0.99
CPSF1-209ENST00000532725 ALDH1A3P47895 512 aa21.23■□□□□ 0.99
CPSF1-209ENST00000532725 MXI1P50539 228 aa21.23■□□□□ 0.99
CPSF1-209ENST00000532725 MARSP56192 900 aaKnown RBP21.23■□□□□ 0.99
CPSF1-209ENST00000532725 CCDC142Q17RM4 750 aa21.23■□□□□ 0.99
CPSF1-209ENST00000532725 CCDC40Q4G0X9 1142 aa21.23■□□□□ 0.99
CPSF1-209ENST00000532725 PABPC1LQ4VXU2 614 aaKnown RBP21.23■□□□□ 0.99
CPSF1-209ENST00000532725 FBXL13Q8NEE6 735 aa21.23■□□□□ 0.99
CPSF1-209ENST00000532725 ACSF2Q96CM8 615 aaPredicted RBP21.23■□□□□ 0.99
CPSF1-209ENST00000532725 SYT15Q9BQS2 421 aa21.23■□□□□ 0.99
CPSF1-209ENST00000532725 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.23■□□□□ 0.997e-6■■■■■ 74.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms